View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_32 (Length: 225)
Name: NF18125_low_32
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45604699 - 45604475
Alignment:
| Q |
1 |
cacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatggaatcacacaa |
100 |
Q |
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| T |
45604699 |
cacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatggaatcacacaa |
45604600 |
T |
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| Q |
101 |
acaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacacaattataagagcatcacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45604599 |
acaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaagatccacataattataagagcatcacc |
45604500 |
T |
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| Q |
201 |
aaagagactcatcaaagcaccttac |
225 |
Q |
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| T |
45604499 |
aaagagactcatcaaagcaccttac |
45604475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 20069858 - 20069999
Alignment:
| Q |
1 |
cacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaaagctatggaaatggaatcacacaa |
100 |
Q |
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||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| || | |||| || ||| || ||||| || | |
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| T |
20069858 |
cacaacaattgccgggaaggaccgacaacgagattaaaaattattggcattcatatctgaaaaagaaagaagtcaaaagtaaggatattgaatctcatac |
20069957 |
T |
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| Q |
101 |
acaatttcaatatgctagctcaagctcagatacaatgaactc |
142 |
Q |
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| T |
20069958 |
tcaaattcaatatgctagttcaagctcagatacaatgaactc |
20069999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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