View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18125_low_33 (Length: 220)

Name: NF18125_low_33
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18125_low_33
NF18125_low_33
[»] chr4 (5 HSPs)
chr4 (1-203)||(31245675-31245877)
chr4 (23-82)||(31477688-31477747)
chr4 (23-82)||(31483545-31483604)
chr4 (23-69)||(31502824-31502870)
chr4 (23-69)||(31527707-31527753)
[»] chr6 (6 HSPs)
chr6 (15-193)||(13609736-13609914)
chr6 (23-69)||(33058867-33058913)
chr6 (23-69)||(33389376-33389422)
chr6 (23-69)||(33643332-33643378)
chr6 (23-69)||(31561539-31561585)
chr6 (23-69)||(33411256-33411302)
[»] chr7 (1 HSPs)
chr7 (114-197)||(14724939-14725022)
[»] chr5 (1 HSPs)
chr5 (114-197)||(17598740-17598823)
[»] chr2 (1 HSPs)
chr2 (23-69)||(17439558-17439604)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31245877 - 31245675
Alignment:
Q  1 tccccttctcacaagttatgaatgatttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactctcttcacatacgtctc 100  Q
    |||| |||||||| ||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||    
T  31245877 tcccgttctcacaggttatgaatgacttatcaacaagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactttattcacgtatgtctc 31245778  T
Q  101 ctctttttcataaaagaaacatgcaatatctagaaagatgtccttttccgtatcatctaatccatcaaaactaattcgaagtacatccataatatctttc 200  Q
    |  ||||| |||||||||||| |||||||||| ||| || |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||    
T  31245777 cgattttttataaaagaaacaagcaatatctaaaaatatatccttttctgtatcctctagtccatcaaaactaattcgaagtacatccataatatctgtc 31245678  T
Q  201 ctt 203  Q
    |||    
T  31245677 ctt 31245675  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 31477747 - 31477688
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaac 82  Q
    |||||||||||||||||||||||| ||||| || | ||||||||||| | ||| ||||||    
T  31477747 tgatttatcaatgagaactcttaatccaatatcggcatgaaatccacaacaatttaaaac 31477688  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 31483604 - 31483545
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaac 82  Q
    |||||||||||  ||||||||||| ||||| |||||||||||||||| | ||| ||||||    
T  31483604 tgatttatcaacaagaactcttaatccaatatcaggatgaaatccacaacaatttaaaac 31483545  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 31502870 - 31502824
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||||||||||||||||||||| || || |||| |||||||||||    
T  31502870 tgatttatcaatgagaactcttaatcctatatcagcatgaaatccac 31502824  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 31527707 - 31527753
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||| ||||||||||||||||| ||||| |||| |||||||||||    
T  31527707 tgatttgtcaatgagaactcttaatccaatatcagcatgaaatccac 31527753  T

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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 13609914 - 13609736
Alignment:
Q  15 gttatgaatgatttatcaatgagaactcttaaaccaatttcaggatgaaatccacgaaaatctaaaactctcttcacatacgtctc-ctctttttcataa 113  Q
    ||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| || ||||| |||| | | || |    
T  13609914 gttattaatgatttatcaaagagaactcttaagccaatttcgggatgaaatccacgaaaatctaaaactttcttcacgtatgtctcgctctctct-atca 13609816  T
Q  114 aagaaacatgcaatatctagaaagatgtccttttccgtatcatctaatccatcaaaactaattcgaagtacatccataat 193  Q
    |||||||| |||||||| ||||| || ||||||||  |||| | || ||||||| ||||||  || ||||||||||||||    
T  13609815 aagaaacaagcaatatccagaaaaatctccttttctatatcctttagtccatcataactaagccgtagtacatccataat 13609736  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 33058867 - 33058913
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  33058867 tgatttatcaatgagaactcttaatccaatatcagcatgaaatccac 33058913  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 33389376 - 33389422
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  33389376 tgatttatcaatgagaactcttaatccaatatcagcatgaaatccac 33389422  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 33643378 - 33643332
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  33643378 tgatttatcaatgagaactcttaacccaatatcagcatgaaatccac 33643332  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 31561585 - 31561539
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||||||    
T  31561585 tgatttatcaaggagaactcttaatccaatatcagcatgaaatccac 31561539  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 33411256 - 33411302
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||||    
T  33411256 tgatttatcaatgagaactcctaatccaatatcagcatgaaatccac 33411302  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 197
Target Start/End: Complemental strand, 14725022 - 14724939
Alignment:
Q  114 aagaaacatgcaatatctagaaagatgtccttttccgtatcatctaatccatcaaaactaattcgaagtacatccataatatct 197  Q
    |||||||| |||||||||||||| || |||||||| ||||| | || ||| |||||||||||||||||||||||||||||||||    
T  14725022 aagaaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattcgaagtacatccataatatct 14724939  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 17598740 - 17598823
Alignment:
Q  114 aagaaacatgcaatatctagaaagatgtccttttccgtatcatctaatccatcaaaactaattcgaagtacatccataatatct 197  Q
    |||||||| |||||||||||||| || |||||||| ||||| | || ||| ||||||||||||  |||||||||||||||||||    
T  17598740 aagaaacaagcaatatctagaaatatatccttttctgtatcctttagtccttcaaaactaattaaaagtacatccataatatct 17598823  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 17439604 - 17439558
Alignment:
Q  23 tgatttatcaatgagaactcttaaaccaatttcaggatgaaatccac 69  Q
    |||||||| ||||||||||||||| ||||| |||| |||||||||||    
T  17439604 tgatttattaatgagaactcttaatccaatatcagcatgaaatccac 17439558  T

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