View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18125_low_6 (Length: 544)
Name: NF18125_low_6
Description: NF18125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18125_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Original strand, 37417017 - 37417518
Alignment:
| Q |
19 |
ttatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaaaactaagttgccgttttcatcaaaagctccctgatattgtccaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37417017 |
ttatttccaacagaaattgtcatcacagtttttccaatagtaaaaatataagaaaaaactaagttgccgttttcatcaaaagctgcctgatattgtccaa |
37417116 |
T |
|
| Q |
119 |
gcgcttttaaccaagatttaccactcatatttcaaagtacaacaccctgatcaaattgtagaactcaaagcgattaaaagtacaatacccttcaaattgt |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417117 |
gcgcttttaaccaagattttccactcatatttcaaagtacaacaccctgatcaaattgtagaactcaaagcgattaaaagtacaatacccttcaaattgt |
37417216 |
T |
|
| Q |
219 |
agaactgatcaatgatcatttaacagaaaaatgaatgacaaagtgatatcttcataggcttttgacccatcctcaattgttatagcaacatccattggtt |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417217 |
agaactgatcaatgattatttaacagaaaaatgaatgacaaagtgatatcttcataggcttttgacccatcctcaattgttatagcaacatccattggtt |
37417316 |
T |
|
| Q |
319 |
tcggtggcactatggtatggtatccaatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttc |
418 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417317 |
tcggtggcactatggtat-----ccgatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttc |
37417411 |
T |
|
| Q |
419 |
aattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttaattagatttctctcctattctcttttgtccgttcgcaatctttc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37417412 |
aattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttt----gatttctctcctattctcttttgtccgttcgcaatctttc |
37417507 |
T |
|
| Q |
519 |
aataaaattgt |
529 |
Q |
| |
|
||||||||||| |
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|
| T |
37417508 |
aataaaattgt |
37417518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Original strand, 37424549 - 37425050
Alignment:
| Q |
19 |
ttatttccaacagaaattgtcatcacagtttttccaatagtaaaaatatacgaaaaaactaagttgccgttttcatcaaaagctccctgatattgtccaa |
118 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37424549 |
ttatttccaacagaatttgtcatcacagtttttccaatagtaaaaatatatgaaaaaactaagttgccgttttcatcaaaagctgcctgatattgtccaa |
37424648 |
T |
|
| Q |
119 |
gcgcttttaaccaagatttaccactcatatttcaaagtacaacaccctgatcaaattgtagaactcaaagcgattaaaagtacaatacccttcaaattgt |
218 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424649 |
gcgcttttaaccaagatttttcactcatatttcaaagtacaacaccctgatcaaattgtagaactcaaagcgattaaaagtacaatacccttcaaattgt |
37424748 |
T |
|
| Q |
219 |
agaactgatcaatgatcatttaacagaaaaatgaatgacaaagtgatatcttcataggcttttgacccatcctcaattgttatagcaacatccattggtt |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424749 |
agaactgatcaatgattatttaacagaaaaatgaatgacaaagtgatatcttcataggcttttgacccatcctcaattgttatagcaacatccattggtt |
37424848 |
T |
|
| Q |
319 |
tcggtggcactatggtatggtatccaatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttc |
418 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424849 |
tcggtggcactatggtat-----cctatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttc |
37424943 |
T |
|
| Q |
419 |
aattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttaattagatttctctcctattctcttttgtccgttcgcaatctttc |
518 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
37424944 |
aattgactgggtggagtttgagaaaacattctaaaactgtgaagaggaaacccttt----gatttctctcctattctcttttgtccgttctcaatctttc |
37425039 |
T |
|
| Q |
519 |
aataaaattgt |
529 |
Q |
| |
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||||||||||| |
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|
| T |
37425040 |
aataaaattgt |
37425050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 34317819 - 34317867
Alignment:
| Q |
478 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaat |
526 |
Q |
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||||||||||||||||||| ||| ||| ||| ||||||||||||||||| |
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| T |
34317819 |
agatttctctcctattctcctttatcctttctcaatctttcaataaaat |
34317867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 529
Target Start/End: Original strand, 10057358 - 10057404
Alignment:
| Q |
483 |
tctctcctattctcttttgtccgttcgcaatctttcaataaaattgt |
529 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||||||||||||| |
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|
| T |
10057358 |
tctctcctattctcgtttgtcctttctcaatctttcaataaaattgt |
10057404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 38358848 - 38358876
Alignment:
| Q |
196 |
aagtacaatacccttcaaattgtagaact |
224 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
38358848 |
aagtacaatacccttcaaattgtagaact |
38358876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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