View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18126_high_1 (Length: 1504)
Name: NF18126_high_1
Description: NF18126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18126_high_1 |
 | |
|
| [»] scaffold0697 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 1437; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1437; E-Value: 0
Query Start/End: Original strand, 13 - 1496
Target Start/End: Complemental strand, 6316339 - 6314855
Alignment:
| Q |
13 |
cacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgtttgcatctctttcctatttgtttttgttcatctttaatggggttat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316339 |
cacaaagtattgtgatgatatttttgtcgttccggatatgtctattttgaatgtttgcatctctttcctatttgtttttgttcatctttaatggggttat |
6316240 |
T |
|
| Q |
113 |
atgtgtaaatggaaaactcaatattatataaattctataaaggaaagcactttgccgaagaaaagcccttggaaaagaaagaattgatttcatcatacct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6316239 |
atgtgtaaatggaaaactcaatattatataaattctataaaggaaagcactttgccaaagaaaagcccttggaaaagaaagaattgatttcaccatacct |
6316140 |
T |
|
| Q |
213 |
ttggaaagagagaattatgagatataattcataggtacaacatcgctcttgagtttttatttttctactttctttagtagtgaaaatagggacagaactg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316139 |
ttggaaagagagaattatgagatataattcataggtacaacatcgctcttgagtttttatttttctactttctttagtagtgaaaatagggacagaactg |
6316040 |
T |
|
| Q |
313 |
attctgagtttctgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6316039 |
attctgagtttctgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatatt |
6315940 |
T |
|
| Q |
413 |
aggatcggatcaatgtgcagcattcatttgtaagcttaggtaggtgtggcgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaag |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315939 |
aggatcggatcaatgtgcagcattcatttgtaagcttaggtaggtgtgccgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaag |
6315840 |
T |
|
| Q |
513 |
atgcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatct |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315839 |
atgcttgtgagttgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatct |
6315740 |
T |
|
| Q |
613 |
aatgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatat |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315739 |
aatgacagttctagtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatat |
6315640 |
T |
|
| Q |
713 |
catttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaa |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315639 |
catttcttcaataatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaa |
6315540 |
T |
|
| Q |
813 |
cccttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaacc |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315539 |
cccttaagtttggttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaacc |
6315440 |
T |
|
| Q |
913 |
aatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccatcacttcatcttcatttgtaaagggat-ccatctgc |
1011 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6315439 |
aatttgcagtcagtcacaattgtccccgtactatttgctcactccataaccctccataaagccgtcacttcatcttcatttgtaaagggatcccatctgc |
6315340 |
T |
|
| Q |
1012 |
ccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttccatctactatatgcctcgtgttaatctccaaa |
1111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315339 |
ccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttccatctactatatgcctcgtgttaatctccaaa |
6315240 |
T |
|
| Q |
1112 |
ttctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagctgcttactt |
1211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315239 |
ttctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagctgcttactt |
6315140 |
T |
|
| Q |
1212 |
cttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaactctgcacatgatgaaa |
1311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6315139 |
cttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaattctgcacatgatgaaa |
6315040 |
T |
|
| Q |
1312 |
atgtcccctgcatgcgtttgaatttgaggtcataggtcactattcccctaagctgttgtagtttcttgccattcaaagaagatatgccttaggaggtgct |
1411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6315039 |
atgtcccctgcatgcgtttgaatttgaggtcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatgccttaggaggtgct |
6314940 |
T |
|
| Q |
1412 |
gtgtgtaggaagggaaagagtgacttctgtccctttttgcaatccacttgtgtgcttttaattccctaacggtcacaggttctgc |
1496 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6314939 |
gtgtgtaggaagggaaagagtgacttctggccctttttgcaatccacttgtgtgcttttaattccctaacagtcacaggttctgc |
6314855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1247 - 1397
Target Start/End: Complemental strand, 6318236 - 6318086
Alignment:
| Q |
1247 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatgaaaatgtcccctgcatgcgtttgaatttgaggtcat |
1344 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||||| || ||| ||| ||||||||||| ||||||| |
|
|
| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatgaaactg--acctacatacgtttgaatttaaggtcat |
6318139 |
T |
|
| Q |
1345 |
aggtcactattcccctaagctgttgtagtttcttgccattcaaagaagatatg |
1397 |
Q |
| |
|
| ||||||| | || || || || ||| ||||| |||||||| |||||||| |
|
|
| T |
6318138 |
atttcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
6318086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 21532470 - 21532406
Alignment:
| Q |
282 |
ttctttagtagtgaaaatagggacagaactgattctgagtttctgtttaacatctgtcgtggctg |
346 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| ||| | ||||||||||| || ||||||| |
|
|
| T |
21532470 |
ttctttaatagtgaagatggggacagaactgattctaagtgtatgtttaacatcagtggtggctg |
21532406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 22905596 - 22905671
Alignment:
| Q |
282 |
ttctttagtagtgaaaatagggacagaactgattctgagtttctgtttaacatctgtcgtggctgctgttatttca |
357 |
Q |
| |
|
||||||| ||||||| || |||| |||||||||||| |||| ||| ||||||| || ||||||| |||||||||| |
|
|
| T |
22905596 |
ttctttaatagtgaagatggggagagaactgattctatgtttatgtgtaacatcagtggtggctggtgttatttca |
22905671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 1e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 264 - 470
Target Start/End: Complemental strand, 55323569 - 55323357
Alignment:
| Q |
264 |
agtttttatttttctactttctttagtagtgaaaatagggacagaactgattctgagtttctgtttaacatctgtcgtggctgct-gttatttcatcagt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||| ||||||||||| ||||||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
55323569 |
agtttttatttttctactttctttagtagcaaagatgggggcagaactgatt--gagtttctgtttaacatctgttgtggcttattgttatttcatcagt |
55323472 |
T |
|
| Q |
363 |
ttagtacccattg-cgatctattgccgctgtgtttgttctgct-----tgcatattaggatcggatcaatgtgcagcattcatttgta-agcttaggtag |
455 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||| |||||| || ||||||||| | |||||||||||| |||||||||||| |||||||||| |
|
|
| T |
55323471 |
ttagtacccattgacgatgtgttgccgctgtgtttgctctgctgcatttgtatattaggacccgatcaatgtgcaacattcatttgtagtgcttaggtag |
55323372 |
T |
|
| Q |
456 |
gtgtggcgtgtgtgt |
470 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
55323371 |
gtgtgcggtgtgtgt |
55323357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 757 - 814
Target Start/End: Complemental strand, 55322887 - 55322830
Alignment:
| Q |
757 |
agatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacc |
814 |
Q |
| |
|
|||||||||| |||| | |||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
55322887 |
agatactttttctaatgaatgagcaacttgtttgacttgtctccttataaaattaacc |
55322830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 472 - 647
Target Start/End: Complemental strand, 51819827 - 51819641
Alignment:
| Q |
472 |
aaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagttgtg----accaatactgtaatctttttt----atcattggtatggt |
563 |
Q |
| |
|
|||||||||||||| | ||||||||| || ||| |||||||||||||||||||||| || |||||| |||||||||| |||| ||||| ||| |
|
|
| T |
51819827 |
aaataattggctttgtctgatctgtatcacaataatacaagatgcttgtgagttgtgtgtgactaatactacaatcttttttttttatcaatggtacggt |
51819728 |
T |
|
| Q |
564 |
tgtgatcataatgtaatgacaattcttcctttgcaaaagataa---caatctaatgacagttctagtatggaagtggtggatattca |
647 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
51819727 |
tgttatcataatgtaatgacaattcctcctttgaaaaatataatactaatctaaatacagttctagcatgaaagtggtggatattca |
51819641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 10641525 - 10641600
Alignment:
| Q |
282 |
ttctttagtagtgaaaatagggacagaactgattctgagtttctgtttaacatctgtcgtggctgctgttatttca |
357 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| ||||| ||| ||||||| || ||||||| |||||||||| |
|
|
| T |
10641525 |
ttctttaatagtgaagatggggacagaactgattctaagtttatgtgtaacatcagtggtggctggtgttatttca |
10641600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0697 (Bit Score: 33; Significance: 0.000000009; HSPs: 1)
Name: scaffold0697
Description:
Target: scaffold0697; HSP #1
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 3428 - 3364
Alignment:
| Q |
282 |
ttctttagtagtgaaaatagggacagaactgattctgagtttctgtttaacatctgtcgtggctg |
346 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||||| ||| | ||||||||||| || ||||||| |
|
|
| T |
3428 |
ttctttaatagtgaagatggggacagaactgattctaagtgtatgtttaacatcagtggtggctg |
3364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University