View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18126_high_3 (Length: 497)
Name: NF18126_high_3
Description: NF18126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18126_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 491
Target Start/End: Original strand, 55185696 - 55186169
Alignment:
| Q |
16 |
ggagcctctgcccgtgaagaaaattaacaacaaggaagaacattgatggacagcaagtaagaaagtgcaatttaacatgacttggatcacaggttatcaa |
115 |
Q |
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| T |
55185696 |
ggagcctctgcccgtgaagaaaattaacaacaaggaagaacattgatggacagcaagtaagaaagtgcaatttaacatgacttggatcacaggttatcaa |
55185795 |
T |
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| Q |
116 |
tagcacatctcagctatcaaattgaagaaaaaagattacatccaactgttttaaataataagctgttgaccaccaacccttgaatgatatattcattgac |
215 |
Q |
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| T |
55185796 |
tagcacatctcagctatcaaattgaagaaaaaagattacatccaactgtttcaaataataagctgttgaccaccaacccttgaatgatatattcattgac |
55185895 |
T |
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| Q |
216 |
aaatacttaacttatcttttgaagggagtttctgaattcagatgagctaaactcatttagtttacccccaactgataaaaatgtagataacctagtaaaa |
315 |
Q |
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| T |
55185896 |
aaatacttaacttatcttttgaagggagtttctgaattcagatgagctaaactcatttagtttacccccaactgataaaaatgtagataacctagtaaaa |
55185995 |
T |
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| Q |
316 |
tttggtatccctactaccaatataactaagagaaataaattctttattatgcaggactttggcgtatttgcacaagagactaatctttcaagtgaacctt |
415 |
Q |
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| T |
55185996 |
tttggtatccctactaccaatataacta--agaaataaattctttattatgcaggactttggcgtatttgcacaagagactaatctttcaagtgaacctt |
55186093 |
T |
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| Q |
416 |
cgaaactatatgggcactaatgtgcactattttagtttttaccaccacccagcgatagtatttattttcttctcac |
491 |
Q |
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| T |
55186094 |
cgaaactatatgggcactaatgtgcactattttagtttttaccaccacccagcggtagtatttattttcttctcac |
55186169 |
T |
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