View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18126_high_4 (Length: 479)
Name: NF18126_high_4
Description: NF18126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18126_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 23 - 467
Target Start/End: Complemental strand, 6316767 - 6316321
Alignment:
| Q |
23 |
agacacaatacaa--ccgatacgtgtctggggttaatatggtttcaatatgatgcagactgaggttatgatatagttttcggcagtgaatatggttattt |
120 |
Q |
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| T |
6316767 |
agacacaatacaataccgatacgtgtctggggttaatatggtttcaatatgatgcagactgaggttatgatatagttttcggcagtgaatatggttattt |
6316668 |
T |
|
| Q |
121 |
ttctctatttgcattgatctttagtttcctatttataaagtctgatatgatatctctgtttgatttggtgggtgatgattgatagatatatccatactct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316667 |
ttctctatttgcattgatctttagtttcctatttataaagtctgatatgatatctctgcttgatttggtgggtgatgattgatagatatatccatactct |
6316568 |
T |
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| Q |
221 |
tactctttgaatctttagtttccagcagagatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacg |
320 |
Q |
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| T |
6316567 |
tactctttgaatctttagtttccagcagagatctgaatgtagataactaataaaaccatcggtaataaacaaccttatgttgcaagatatgtacaaaacg |
6316468 |
T |
|
| Q |
321 |
gtggctcattttttaactaatatggttggataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316467 |
gtggctcattttttaactaatatggttggataaatcattttaattgtgatttatgtgttgatttcatgcctctgccttgagtgtaatgtccattttgtgt |
6316368 |
T |
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| Q |
421 |
atttagtatgatggaggaactagctttacacaaagtattgtgatgat |
467 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316367 |
atttagtatgatggaggaactagctttacacaaagtattgtgatgat |
6316321 |
T |
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