View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18126_low_5 (Length: 436)
Name: NF18126_low_5
Description: NF18126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18126_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 12339585 - 12339833
Alignment:
| Q |
1 |
tctgtaggatatcttgctttgaattgactcatggttttgttaagacgcttgataatggtttcagaagtgggtttgttcttcatttttagataatttggtt |
100 |
Q |
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| T |
12339585 |
tctgtaggatatcttgctttgaattgactcatggttttgttaagatgcttgataatggtttcagaagtgggtttgttcttcatttttagataatttggtt |
12339684 |
T |
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| Q |
101 |
gatgtagcagaagtggttatatatatagtatgcaacttgcaagaaagaagaagaaagagtggaatgtgaaaaggtctcgtgtcgagtcaagtggatacaa |
200 |
Q |
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| T |
12339685 |
gatatagcagaagtggtta--------gtatgcaacttgcaagaaagaagaagaaagagtggaatgtgaaaaggtctcgtgtcgagtcaagtggatataa |
12339776 |
T |
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| Q |
201 |
tgatcttaaagtacactaaatataatctagttgggagatgtaccgctagtttgattt |
257 |
Q |
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| T |
12339777 |
tgatcttaaagtacactaaatataatctagttgggagatgtaccgctagtttgattt |
12339833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 255 - 421
Target Start/End: Original strand, 12339854 - 12340020
Alignment:
| Q |
255 |
tttttgaaatatacgtttaagttttctatgcattctgaacagannnnnnnnaaatgaatagcaaaatattcccttgaaattttaaatacttgtaaatatt |
354 |
Q |
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| T |
12339854 |
ttttttaaatattcgtttaagttttctatgcattctgaacagattttttttaaatgaatagcaaaattttcctctgaaattttaaatacttgcaaatatt |
12339953 |
T |
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| Q |
355 |
tccctcaatctcaaattttcgaaatgacaaatacccccatcaatttgttaagcgttaatgtggcaag |
421 |
Q |
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| T |
12339954 |
tccttcaatctcaaattttcgaaatgacaaatacccccatcaatttgttaaccgttaatgtggcaag |
12340020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 12347765 - 12347817
Alignment:
| Q |
309 |
tgaatagcaaaatattcccttgaaattttaaatacttgtaaatatttccctca |
361 |
Q |
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| T |
12347765 |
tgaataggaaaataaccccttaaaattttaaattcttgcaaatatttccctca |
12347817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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