View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18126_low_9 (Length: 336)
Name: NF18126_low_9
Description: NF18126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18126_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 14570261 - 14569953
Alignment:
| Q |
19 |
actataataagaatgcattaaatataacgtacaatataaactaaaacgctacaatcataaatgaaaaacgtgacaaacataataattattggtaacaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14570261 |
actataataagaatgcattaaatataacgtacaatataaactaaaacggtacaatcataaatgaaaaacgtgacaaacataataattattggtaacaaat |
14570162 |
T |
|
| Q |
119 |
ttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccacttcggaccaatttgtgttgtgttgttgatgttgtttttctcca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14570161 |
ttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccacttcggaccaatttgtgttgtgttgttgatgttgtttttcttca |
14570062 |
T |
|
| Q |
219 |
taatctccacaaaatataatgttatcgcacacattgtagcacaaataatttgcaaaatttgaaggtaaagtctgcaatatatatgaaaaataaagtaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14570061 |
taatctccacaaaatataatgttatcgcacacattgtagcacaaataatttgcaaaatttgaaggtaaagtctgcaatatatatgaaaaataaagtaaat |
14569962 |
T |
|
| Q |
319 |
aagtataat |
327 |
Q |
| |
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||||||||| |
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| T |
14569961 |
aagtataat |
14569953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 19782250 - 19782054
Alignment:
| Q |
19 |
actataataagaatgcattaaatataacgtacaatataaactaaaacgctacaatcataaatgaaaaacgtgacaaacataataattattggtaacaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19782250 |
actataataagaatgcattaaatataacgtacaatataaactaaaacggtaaaatcataaatgaaaaacatgacaaacataataattattggtaacaaat |
19782151 |
T |
|
| Q |
119 |
ttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccacttcggaccaatttgtgttgtgttgttgatgttgtttttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
19782150 |
ttaaatcttatatagtctccaatataaaaattctgctgaacaataaattggttccagttcggaccaatttgtgttgtgttgttgatgttgttcttct |
19782054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 213 - 327
Target Start/End: Complemental strand, 19782033 - 19781919
Alignment:
| Q |
213 |
tctccataatctccacaaaatataatgttatcgcacacattgtagcacaaataatttgcaaaatttgaaggtaaagtctgcaatatatatgaaaaataaa |
312 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19782033 |
tctccataatctccacaaaatataatgttgtcgtacacattgtagcacaaataatttgcaaaatctgaaggtaaagtctgcaatatatatgaaaaataaa |
19781934 |
T |
|
| Q |
313 |
gtaaataagtataat |
327 |
Q |
| |
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||||||||||||||| |
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| T |
19781933 |
gtaaataagtataat |
19781919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 54599021 - 54599118
Alignment:
| Q |
71 |
aatcataaatgaaaaacgtgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattg |
168 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| | || |||||||||| |||||||| || |||||| |
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| T |
54599021 |
aatcataattgaaaaacgtgacatacataataattattcaaaataaatttaaatcttatataaccccctatataaaaatcctgctgaagaacaaattg |
54599118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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