View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18127_high_1 (Length: 831)
Name: NF18127_high_1
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_1 |
 | |
|
| [»] scaffold0820 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 51 - 479
Target Start/End: Complemental strand, 41086212 - 41085784
Alignment:
| Q |
51 |
ggcgcaacccgtgcgaacgcacgggtagagcactagtctagtgataaatgattattttagcttatgagactagtcaaaatgtcgagttctattacgggac |
150 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41086212 |
ggcgcaacccgtgcgaacgcacgggtacagcactagtctagtgataaatgattattttagcttatgagactagtcaaaatgtcgagttctattacgggac |
41086113 |
T |
|
| Q |
151 |
gggaccctnnnnnnnnnnnnnngacggagcatgaaggctagttatgtaaatgagtgaaggacattggtaacatgatgtgataattatcacataaataatg |
250 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41086112 |
gggaccctaaaaaaccaaaaaagacggagcatgaaggctagttatgtaaatgagtgaaggacattggtaacatgatgtgataattatcacataaataatg |
41086013 |
T |
|
| Q |
251 |
aaagtaggaaagtcgttgttaaatcacacgagtagcaaagtctttggtaacacacacacgaggaaccaacaacaaacaagcaaagcaaagtcattgccgt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41086012 |
aaagtaggaaagtcgttgttaaatcacacgagtagcaaagtctttggtaacacacacacgaggaaccaacaacaaacaagcaaagcaaagtcattgccgt |
41085913 |
T |
|
| Q |
351 |
gtttgacctgaactcaaacaggaacacaacctttttggcttatactctctcacacgacacaaattacacgccaatcaatcttaaatctcagatttttctt |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41085912 |
gtttgacctgaactcaaacaggaacacaacctttttggcttatactctctcacacgacacaaattacacgccaatcaatcttaaatctcagatttcactt |
41085813 |
T |
|
| Q |
451 |
cttgtctctcatttttccttgttaagcaa |
479 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41085812 |
cttgtctctcatttttccttgttaagcaa |
41085784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 515 - 817
Target Start/End: Complemental strand, 41085760 - 41085460
Alignment:
| Q |
515 |
gcagctgatcgatctacttcttcctcttttttccttattgtgaaagtaagaaaacacacaaacatgagacgagttaataatagaaatgatggaagagatt |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41085760 |
gcagctgatcgatctacttcttcctcttttttccttattgtcaaagtaagaaaacacacaaacatgagaagagttaataatagaaatgatggaagagatt |
41085661 |
T |
|
| Q |
615 |
ccaacaacactttagatactataaacgctgctgcttttgctatagcttcttcccaggatcgtcttcaaccttctactgctactaatcaggtataatccaa |
714 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41085660 |
ccaacaacactttagatactataaacgctgctgcttttgctatagcttcttcccatgatcgtcttcaaccttctactgctactaatcaggtataatccaa |
41085561 |
T |
|
| Q |
715 |
taacgaacannnnnnnccttc-tttatcttcacaccacnnnnnnnngtaaataattgccttttnnnnnnnnttatatttttctgttcaaactagttagaa |
813 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
41085560 |
taacaaacatttttttccttcttttatcttcacaccac---tttttgtaaataattgccttttaaaaaaaatgatatttttctgttcaaactagttagaa |
41085464 |
T |
|
| Q |
814 |
agtg |
817 |
Q |
| |
|
|||| |
|
|
| T |
41085463 |
agtg |
41085460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0820 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0820
Description:
Target: scaffold0820; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 436 - 481
Alignment:
| Q |
42 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
436 |
tgcgccaacggcgcaacccgtgcggacgcacgggtacaacactagt |
481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 111588 - 111543
Alignment:
| Q |
42 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | ||||||| |
|
|
| T |
111588 |
tgcgccaacggcgcaacccatgcgaacgcacgggtacaacactagt |
111543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 11557959 - 11558004
Alignment:
| Q |
42 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
11557959 |
tgcgccaacagcgcaacccgtgcgaacgcacgggtacaacactagt |
11558004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 41402225 - 41402268
Alignment:
| Q |
42 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcacta |
85 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
41402225 |
tgcgccaacggcgcaacctgtgcgaacgcacgagtacagcacta |
41402268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 22873544 - 22873588
Alignment:
| Q |
42 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
22873544 |
tgcgccaacggcgcaacccgtgcgaactcac-ggtacagcactagt |
22873588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 4102361 - 4102406
Alignment:
| Q |
42 |
tgcgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | ||||||| |
|
|
| T |
4102361 |
tgcgccaacggcgcaacccgtgcggacgcacgggtacaacactagt |
4102406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 26440807 - 26440764
Alignment:
| Q |
44 |
cgccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| | ||||||| |
|
|
| T |
26440807 |
cgccaacggcgcaacctgtgcgaacgcacgggtacaacactagt |
26440764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 22034300 - 22034258
Alignment:
| Q |
45 |
gccaacggcgcaacccgtgcgaacgcacgggtagagcactagt |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
22034300 |
gccaacggcgcaacccgtgcgaacgcacggatacatcactagt |
22034258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University