View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_high_15 (Length: 419)
Name: NF18127_high_15
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 32164317 - 32163924
Alignment:
| Q |
11 |
catagggtctccttagagagaaatcgaaaatgacaagggagaagaaacgagccatgtgtcacatccatggtcgcttaacatggtttgaggacaatggtca |
110 |
Q |
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| T |
32164317 |
catagggtctccttagagagaaatcgaaaatgacaagggagaagaaacgagccatgtgtcacatccatggtcacttaacatggtttgaggacaatggtca |
32164218 |
T |
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| Q |
111 |
aaattaagcaatgtctcatttctaataatttgcctagtgagttacaattcacaagaaataagactatgtttaatttttggccattgcgcttttgagcatc |
210 |
Q |
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| T |
32164217 |
aaattaagcagtgtctcatttctaataatttgcctagtgagttacaattcacaagaaataagactatgtttaatttttggccattgcgcttttgagcatc |
32164118 |
T |
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| Q |
211 |
tcaacgacggagataatagagtaatgaacaacaacttctaaatgtaaatccaaaccaatcttaacttatttcagagggaaccattagattttttccttct |
310 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
32164117 |
tcaacgacggatgtaataaagtaatgaacaacaacttctaaatgtaaatccaaaccaatcttaatttatttcagagggaaccattagtttttttccttct |
32164018 |
T |
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| Q |
311 |
tttttgttagaatgcaggaaggagtgga-nnnnnnnnnnnnnngatagaacatgggaatcaatagttaaaacaaaaatagttatatcaaatatt |
403 |
Q |
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|||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32164017 |
tttttgttagaatgtagaaaggagtggattttttttcttttttgatagaacatgggaatcaatagttaaaacaaaaatagttatatcaaatatt |
32163924 |
T |
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