View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_high_17 (Length: 412)
Name: NF18127_high_17
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 31714792 - 31714393
Alignment:
| Q |
1 |
ttggtgctgcataatccggcttcagttctggcttttatttatctagcagtatgttgagaacattgaactttggatagcataatataaggtgtgtaacagt |
100 |
Q |
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| T |
31714792 |
ttggtgctgcataatccggcttcagttctggcttttatttatctagcagtatgttgagaacattgaactttggatagcaaaacatatggtgtgtaacagt |
31714693 |
T |
|
| Q |
101 |
cataattaaaaaactatggaaatgaggacaaggctttacattgttccgaatttgaatgttcaatcataatggtttatggagtctannnnnnnnnnnnnnn |
200 |
Q |
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| T |
31714692 |
cataattaaataactatggaaatgaggacaaggctttacattgttccgaatttgaatgttcaatcataatggtttatggagtctatgtgtgtgtgtgtgt |
31714593 |
T |
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| Q |
201 |
ttggaattatattaggtgataatatacaatcataatgaatattgaattattaggattagaattatgtataccattcttaaaatgcagggcttgatgacgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31714592 |
ttggaattatattaggtgataatatacaatcataatgaatgttgaattattaggattagaattatgtatacgattcttaaaatgcagggcttgatgacgg |
31714493 |
T |
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| Q |
301 |
aatgattagaggagaccacttgacagcatgtgtatat---atggtgcagcannnnnnnnnnncttctaagaagtcaaattaacccaccgaaattgacact |
397 |
Q |
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||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31714492 |
aatgattggaggagaccacttgacagcaggtgtatatatgatggtgcagcatattttt-----ttctaagaagtcaaattaacccaccgaaattgacact |
31714398 |
T |
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