View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_high_20 (Length: 397)
Name: NF18127_high_20
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 3145997 - 3145625
Alignment:
| Q |
8 |
aagtattgatgcttggatgtgagcatttgatttcagtttttcttcaacgatctcaaagaatgaaaacaaaactgtcttgttttctagtttttgcaacatc |
107 |
Q |
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| T |
3145997 |
aagtattgatgcttggatatgagcatttgatttcagtttttcttcaacgatctcaaagaatgaaaacaaaactgtcttgttttctagttattgcaacatc |
3145898 |
T |
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| Q |
108 |
cttgaaacctcgtttccagatcactctaaggctcttgttctctagttaatctttgtgcttcaagctgatatgtggttgaaacttgaaactgtagttgagc |
207 |
Q |
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| T |
3145897 |
cttgaaaccttgtttccagatcactctaaggctcttgttctctagttaatctttgtgcttcaagttgatatgtggtatatacttgaaactgtagttgagt |
3145798 |
T |
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| Q |
208 |
aagacttttttgagaatcgacttgcttcatcacgtgtatatgcttaataagnnnnnnnnntggcattaatttggtctgtttatcaagttttaactacttg |
307 |
Q |
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| T |
3145797 |
aagacatttttgagaatcgactcgcttcatcatgtgtatatgcttaataag-aaaaaaaatggcattaatttggtctgtttatcaagttttaactacttg |
3145699 |
T |
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| Q |
308 |
acagtgtgagtataaagggtatgacagattagtttctcaactaatgtgtgggaaaatgtaccataagaaataga |
381 |
Q |
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| T |
3145698 |
acagtgtgagtataaagggtatgacagattagtttctcaactaatgtgtgggaaaatgtaccataagaaataga |
3145625 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 28910368 - 28910312
Alignment:
| Q |
8 |
aagtattgatgcttggatgtgagcatttgatttcagtttttcttcaacgatctcaaa |
64 |
Q |
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| T |
28910368 |
aagtattgttgcttgcatatcagtatttgatttcagttttccttcaacaatctcaaa |
28910312 |
T |
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