View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_high_27 (Length: 301)
Name: NF18127_high_27
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 35 - 291
Target Start/End: Complemental strand, 7163211 - 7162955
Alignment:
| Q |
35 |
ttttgaacccttcttcatctctttactaccgatttacagcaacatgattacacgcaaggctactttgcctccaacaccaaaaataagggaaaccaactgc |
134 |
Q |
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| T |
7163211 |
ttttgaacccttcttcatctctttactaccgatttacagcaacatgattacacgcaaggctactttgcctccaacaccaaaaataagggaaaccaactgc |
7163112 |
T |
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| Q |
135 |
cgcaaaaggaaacctgaaaagagagaaccgtttggagacacaggcaacaaccagatacactcgaagaaggcgataaagaaatcaacggagatgaagggac |
234 |
Q |
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| T |
7163111 |
cgcaaaaggaaacctgaaaagagagaaccgtttggagacacaagcaacaaccagatacactcgaagaaggcgataaagaaatcaatggagatgaagggag |
7163012 |
T |
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| Q |
235 |
ggaaggaggctgttgtagattccattaaactcaaaccaacatcgagagccagaataa |
291 |
Q |
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| T |
7163011 |
ggaaggaggctgttgtaaattccattaaactcaaaccaacatcaagagccaaaataa |
7162955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 28817147 - 28817111
Alignment:
| Q |
210 |
aagaaatcaacggagatgaagggacggaaggaggctg |
246 |
Q |
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| T |
28817147 |
aagaaatcaacggagaagaagggagggaaggaggctg |
28817111 |
T |
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