View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18127_high_3 (Length: 638)
Name: NF18127_high_3
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 237 - 620
Target Start/End: Original strand, 21274530 - 21274914
Alignment:
| Q |
237 |
atacatgctgtgtgaaaagatattttagtagtttcatctcatgtgaaagagaatgttgggtgaggtgatgagggtcatatggtcacgtatcatatttacg |
336 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
21274530 |
atacacgctgtgtgaaaagatattttagtagtttcacctcatgtgaaagagaatgttggatgaggtgataagggtcatatggtcacatatcatatttacg |
21274629 |
T |
|
| Q |
337 |
tgtggtggtagaagatgtgtctatcacttctggtggtcaatgtattcaccactctaattnnnnnnnnt-cagagtaaatttaacgaaaatcaaactcatg |
435 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
21274630 |
tgtggtggtagaagacgtgtctatcacttctggtggtcaatatattcaccactctaattaaaaaaaattcaaagtaaatttaacgaaaatcaaactcatg |
21274729 |
T |
|
| Q |
436 |
taagcaaatattctattttgataaaataaactatcaaatacttgattagcttccttggtacatgtttcatttggggacaacccaagagtgagccttgtga |
535 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21274730 |
taagcaaatattctattttgataaaacaaactatcaaatacttgattagcttccttggtacatgtttcatttggggacaacccaagagtgagccttgtga |
21274829 |
T |
|
| Q |
536 |
caaacttttctttttgaggggagccttgtaacaatctaagttgagtaaattaattgcaaagagagaatcagggtcatggcagatc |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21274830 |
caaacttttctttttgaggggagccttgtaacaatctaagttgagtaaattaattgcaaagagagaatctgggtcatggcagatc |
21274914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 21274299 - 21274508
Alignment:
| Q |
1 |
ccttggggacaacttgatgatgccaaagatcaactagctggccatagtggtccctcactaggaaataagatannnnnnnggtgaagggtatggggaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
21274299 |
ccttggggacaacttgatgatgccaaagatcaactagctggccatagtggtccctcactaggaaataagatatttttttggtgaagggtatggggcaaaa |
21274398 |
T |
|
| Q |
101 |
accctaacaagaaactagattagagaacatgcagaaatgaaacttggttgacatcgggagttcgaaatgaaagtcagtactttattaacacaataatgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21274399 |
accctaacaagaaactagattagagaacatgcaggaaggaaacttggttgacatcgggagttcgaaatgaaagtcagtactttattaacacaataatgtt |
21274498 |
T |
|
| Q |
201 |
aagttgatgc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
21274499 |
aagttgatgc |
21274508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 391
Target Start/End: Complemental strand, 12404296 - 12404155
Alignment:
| Q |
247 |
tgtgaaaagatattttagtagtttcatctcatgtgaaagagaatgttgggtgaggtgatgagggtcatatggtcacgtatcatatttacgtgtggtggta |
346 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||| |||||||| |||| |||| | || ||||||||| || ||||| ||||||| ||||||||||| |
|
|
| T |
12404296 |
tgtgaaaagatattttagtaattttatcccatttgaaagag--tgttaggtgggatggtgagggtcacatccccacgtgtcatattagtgtgtggtggta |
12404199 |
T |
|
| Q |
347 |
gaagatgtgtctatcacttctggtggtcaatgtattcaccactct |
391 |
Q |
| |
|
|||||||||| | ||| | |||||||||| ||| |||||||||| |
|
|
| T |
12404198 |
gaagatgtgtgtgccacctatggtggtcaacgta-tcaccactct |
12404155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University