View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18127_high_30 (Length: 275)

Name: NF18127_high_30
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18127_high_30
NF18127_high_30
[»] chr5 (3 HSPs)
chr5 (11-259)||(26380039-26380287)
chr5 (20-259)||(36429638-36429868)
chr5 (16-253)||(5348068-5348296)
[»] chr4 (2 HSPs)
chr4 (20-259)||(27455276-27455506)
chr4 (20-259)||(49681596-49681833)
[»] chr3 (3 HSPs)
chr3 (20-259)||(47471049-47471279)
chr3 (16-259)||(50837797-50838032)
chr3 (16-253)||(54560378-54560606)
[»] scaffold0102 (1 HSPs)
scaffold0102 (16-259)||(32704-32938)
[»] chr6 (4 HSPs)
chr6 (20-259)||(30709849-30710079)
chr6 (16-259)||(17732355-17732589)
chr6 (16-253)||(15347777-15348005)
chr6 (20-259)||(6008974-6009198)
[»] chr7 (1 HSPs)
chr7 (16-259)||(36067667-36067901)
[»] chr2 (2 HSPs)
chr2 (20-259)||(10256053-10256283)
chr2 (16-253)||(4592970-4593192)
[»] chr8 (2 HSPs)
chr8 (20-253)||(20111831-20112056)
chr8 (16-253)||(14791022-14791250)
[»] chr1 (1 HSPs)
chr1 (16-259)||(47445321-47445555)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 26380039 - 26380287
Alignment:
Q  11 cacagacagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttct 110  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26380039 cacaaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatggttct 26380138  T
Q  111 tctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttccttttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  26380139 tctcattctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttccttttt 26380238  T
Q  211 ggagtagcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    |||| ||||||||||||||||| |||||  || ||||||||||||||||    
T  26380239 ggagcagcgatgagattatcaataacaatgatcatcatcatcatcaatt 26380287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 36429638 - 36429868
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  ||||||||| || || ||| |||||||||||||||    
T  36429638 aatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctcattct 36429737  T
Q  120 catgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcg 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||| ||||||||| ||||    
T  36429738 catgatgttactgttccatcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcttttttggagcagcg 36429831  T
Q  220 atgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||   | |||||||||||||||||||||||||||    
T  36429832 atgagatt---accaacaacaatgatcatcatcatcaatt 36429868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 5348068 - 5348296
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||| | |||||||||    
T  5348068 acagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 5348167  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||     
T  5348168 ttctcatgatgttattgttccatcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagc 5348261  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatca 253  Q
    ||||||||||||||   |||||||||||||||||||||    
T  5348262 agcgatgagattat---caacaacaatgatcatcatca 5348296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 27455276 - 27455506
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || |||||| |||||||||||||||    
T  27455276 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattct 27455375  T
Q  120 catgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcg 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||      ||||||||||||| |||||||||||||| ||||    
T  27455376 catgatgttactgttccatcatcactcatgtctcctcttcagaataaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcg 27455469  T
Q  220 atgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||   | |||||||||||||||||||||||||||    
T  27455470 atgagatt---accaacaacaatgatcatcatcatcaatt 27455506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 49681833 - 49681596
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||| || |||||| | |||||||||||||    
T  49681833 aatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaacaacgattcttctcattct 49681734  T
Q  120 catgatgttactgttccatcatcact------catgtc-tcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttgg 212  Q
    ||||||||||||||||||||||||||      |||||| | ||||| |||||||||||||||||||||      ||||||||||||||||||||||||||    
T  49681733 catgatgttactgttccatcatcactgaatagcatgtcttaatctttagaatcaatcactttttaacc------ctcattcaaatgggtttcctttttgg 49681640  T
Q  213 agtagcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    || ||||||||||||||   |||||||||||||||||||||||||||    
T  49681639 agcagcgatgagattat---caacaacaatgatcatcatcatcaatt 49681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 47471049 - 47471279
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| || || ||| |||||||||||||||    
T  47471049 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctcattct 47471148  T
Q  120 catgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcg 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||||||||||||| ||||    
T  47471149 catgatgttactgttccatcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagcagcg 47471242  T
Q  220 atgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||   | |||||||||||||||||||||||||||    
T  47471243 atgagatt---accaacaacaatgatcatcatcatcaatt 47471279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 50838032 - 50837797
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||| | |||||||||    
T  50838032 acagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctca 50837933  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||     
T  50837932 ttctcatgatgttattgttccatcatcactcatgtctcctcttcagaatcaatcactttttaaccc-----ctcattcaaatggatttcctttttggagc 50837838  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    |||||||| |||||   |||||||| ||||||||||||||||||    
T  50837837 agcgatgaaattat---caacaacactgatcatcatcatcaatt 50837797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 54560378 - 54560606
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||| | |||||||||    
T  54560378 acagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 54560477  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||      ||||||||||||| ||||||||||||||     
T  54560478 ttctcatgatgttattgttccatcatcactcatgtctcctcttcataatcaatcactttttaacc------ctcattcaaatggatttcctttttggagc 54560571  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatca 253  Q
    ||||||||||||||   |||||||||||||||||||||    
T  54560572 agcgatgagattat---caacaacaatgatcatcatca 54560606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 32704 - 32938
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || || ||| |||||||||||    
T  32704 acagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctca 32803  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||      ||||||||||||| ||||||||||||||     
T  32804 ttctcatgatgttactgttccatcatcactcatgtctccttttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagc 32897  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    || |||||||||   | |||||||||||||||||||||||||||    
T  32898 agtgatgagatt---accaacaacaatgatcatcatcatcaatt 32938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 30709849 - 30710079
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| || || ||| |||||||||||||||    
T  30709849 aatgaataatagaaaagatcatgaacttgtttgaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattct 30709948  T
Q  120 catgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcg 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| |||| ||||||||| ||||    
T  30709949 catgatgttactgttccatcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcttttttggagcagcg 30710042  T
Q  220 atgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||   | |||||||||||||||||||||||||||    
T  30710043 atgagatt---accaacaacaatgatcatcatcatcaatt 30710079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 17732589 - 17732355
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||| | |||||||||    
T  17732589 acagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctca 17732490  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||     
T  17732489 ttctcatgatgttattgttccatcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagc 17732396  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||||||||   |||||||| ||||||||||||||||||    
T  17732395 agcgatgagattat---caacaacactgatcatcatcatcaatt 17732355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 15347777 - 15348005
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||| | |||||||||    
T  15347777 acagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 15347876  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||      ||||||||||||| ||||| ||||||||     
T  15347877 ttctcatgatattattgttccatcatcactcatgtctcctctttagaatcaatcactttttaacc------ctcattcaaatggatttccattttggagc 15347970  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatca 253  Q
    ||||||||||||||   |||||||||||||||||||||    
T  15347971 agcgatgagattat---caacaacaatgatcatcatca 15348005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 6009198 - 6008974
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||| |||||||||| || |||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||||| |||||||||||||    
T  6009198 aatgaataacagaaaagatcgtggacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaatgtttcttctcattct 6009099  T
Q  120 catgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcg 219  Q
    ||      || ||||||||||||||||||||||| ||||||||||||||||||||| ||||      ||||||||||||| |||||||||||||| ||||    
T  6009098 ca------tattgttccatcatcactcatgtctcctcttcagaatcaatcacttttgaacc------ctcattcaaatggatttcctttttggagcagcg 6009011  T
Q  220 atgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||||   |||||||||||||||||||||||||||    
T  6009010 atgagattat---caacaacaatgatcatcatcatcaatt 6008974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 36067667 - 36067901
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||| || |||||||||||    
T  36067667 acagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaataacggttcttctca 36067766  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||       ||||||||||||| ||||||||||||||     
T  36067767 ttctcatgatgttactgttccatcgtaactcatgtctcctcttcaaaatcaatcactttttaac------tctcattcaaatggatttcctttttggagc 36067860  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||||||||   |||||||||||||||||||||||||||    
T  36067861 agcgatgagattat---caacaacaatgatcatcatcatcaatt 36067901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 259
Target Start/End: Original strand, 10256053 - 10256283
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctcattct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || || ||| |||||||||||||||    
T  10256053 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattct 10256152  T
Q  120 catgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagcg 219  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||      ||||||||||||| ||||| |||||||| ||||    
T  10256153 catgatgttactgttccatcatcactcatgtctcctcttgagaatcaatcactttctaacc------ctcattcaaatggatttccattttggagcagcg 10256246  T
Q  220 atgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    ||||||||   | |||||||||||||||||||||||||||    
T  10256247 atgagatt---accaacaacaatgatcatcatcatcaatt 10256283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 4592970 - 4593192
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || |      | |||||||||    
T  4592970 acagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaac------gtttcttctca 4593063  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||      ||||||||||||  ||||||||||||||     
T  4593064 ttctcatgatgttattgttccatcatcactcatgtctcctcttcataatcaatcactttttaacc------ctcattcaaatgaatttcctttttggagc 4593157  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatca 253  Q
    ||||||||||||||   |||||||||||||||||||||    
T  4593158 agcgatgagattat---caacaacaatgatcatcatca 4593192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 20112056 - 20111831
Alignment:
Q  20 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggttt-atgatgaataacattaacaacaacaacagcaacaatggttcttctcattc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| || |||||| ||||||||||||||    
T  20112056 aatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattc 20111957  T
Q  119 tcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagtagc 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||| ||| |||||||||| |||    
T  20111956 tcatgatgttactgttccatcatcactcatgtctcatcttcaaaatcaatcactttttaacc------ctcattcaaatggattttctttttggagcagc 20111863  T
Q  219 gatgagattatcaacaacaacaatgatcatcatca 253  Q
    |||||||||   | |||||||||||||||||||||    
T  20111862 gatgagatt---accaacaacaatgatcatcatca 20111831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 14791022 - 14791250
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    |||||| |||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||| || || ||| | |||||||||    
T  14791022 acagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctca 14791121  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||     
T  14791122 ttctcatgatgttattgttccatcatcactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagc 14791215  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatca 253  Q
    ||||||||||||||   |||||||||||||||||||||    
T  14791216 agcgatgagattat---caacaacaatgatcatcatca 14791250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 47445555 - 47445321
Alignment:
Q  16 acagaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacaacaacagcaacaatggttcttctca 115  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| || || ||| |||||||||||    
T  47445555 acagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacagcaacggttcttctca 47445456  T
Q  116 ttctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaatcactttttaaccctcaggctcattcaaatgggtttcctttttggagt 215  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||      ||||||||||||| ||||||||||||||     
T  47445455 ttctcatgatgttactgttccatcaccactcatgtctcctcttcagaatcaatcactttttaacc------ctcattcaaatggatttcctttttggagc 47445362  T
Q  216 agcgatgagattatcaacaacaacaatgatcatcatcatcaatt 259  Q
    | ||||||||||   | |||||||||||||||||||||| ||||    
T  47445361 aacgatgagatt---accaacaacaatgatcatcatcataaatt 47445321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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