View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18127_high_35 (Length: 244)

Name: NF18127_high_35

Description: NF18127

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18127_high_35

[»] chr5 (3 HSPs)

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 3)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 83; E-Value: 2e-39

Query Start/End: Original strand, 76 - 228

Target Start/End: Original strand, 38744279 - 38744435

Alignment:

Q	76	gaagaagccatttaccttatatcattaataattcagttttgaataaaagctgattannnnnnn----acgtatagccnnnnnnnnattgttaacagaccg	171	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38744279	gaagaagccatttaccttatatcattaataattcagttttgaataaaagctgattttttttttttttacgtatagccttttttttattgttaacagaccg	38744378	T

Q	172	tcgttttattttgtgttaacccttgcttttacgagaaagacacggtaatatagagtt	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	38744379	tcgttttattttgtgttaacccttgcttttacgagaaagatacggtaatttagagtt	38744435	T

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Target: chr5; HSP #2

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 84 - 129

Target Start/End: Complemental strand, 38782067 - 38782022

Alignment:

Q	84	catttaccttatatcattaataattcagttttgaataaaagctgat	129	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38782067	catttactttatatcattaataaatcagttttgaataaaagctgat	38782022	T

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Target: chr5; HSP #3

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 84 - 126

Target Start/End: Complemental strand, 38788140 - 38788098

Alignment:

Q	84	catttaccttatatcattaataattcagttttgaataaaagct	126	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38788140	catttactttatatcattaataattccgttttgaataaaagct	38788098	T

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