View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_high_6 (Length: 539)
Name: NF18127_high_6
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Original strand, 6921642 - 6922157
Alignment:
| Q |
8 |
gtttatgttatttaacttgtcatttagtaactatgaatcagtnnnnnnnnctaattaatcgatccaatccaaatcatatttaattgattcaaatcaaata |
107 |
Q |
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| T |
6921642 |
gtttatgttatttaacttgtcatttagtaactatgaatcagtaaaaaaaactaattaatcgatccaatccaaatcatatttaattgattcaaatgaaata |
6921741 |
T |
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| Q |
108 |
tttttaaagaagcaattcaaaataattgaatcgaacggcatgctattttaatatttggattcaatggttttctatctcatctcaaaatccatatatccag |
207 |
Q |
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| T |
6921742 |
tttttaaagaagcaattcaaaataattgaatcgaacggcatgctattttaatatttggattcaatggttttctatctcatctcaaaatccatatatccag |
6921841 |
T |
|
| Q |
208 |
annnnnnnnnnnn-gacaacaatccatatacaaaaccatatactactaaacgatattcaaaatcttgccgcctagtattaattaaactaataaagccatt |
306 |
Q |
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| T |
6921842 |
attttattttttttgacaacaatccatatacaaaaccatata------aataatattcaaaatcttgccgcctagtattaattaaactaataaagccatt |
6921935 |
T |
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| Q |
307 |
aaattatagctaaggatgccccatcctagtatgaaccacgtaagctagaaatagaatgaataaacaataccaatcatgcactcaccacaggatccacatg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6921936 |
aaattatagctaaggatgccccatcctagtatgaaccacgtaagctagaaatagaatgaataaacaataccaatcatgcactcaccacaggatccacatg |
6922035 |
T |
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| Q |
407 |
caaatttgtttacaaaattaacacaagttgcatattgtagcttcttctaaccccttactccaaaggatagggtcttgattaattggacctttgtaggttt |
506 |
Q |
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| T |
6922036 |
caaatttgtttacaaaattaacacaagttgcatattgtagcttcttctaaccccttactccaaaggatagggtcttgattaattggacctttgtaggttt |
6922135 |
T |
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| Q |
507 |
gccatatcattgacagcttcat |
528 |
Q |
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|||||||||||||||||||||| |
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| T |
6922136 |
gccatatcattgacagcttcat |
6922157 |
T |
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