View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18127_low_10 (Length: 488)

Name: NF18127_low_10
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18127_low_10
NF18127_low_10
[»] chr4 (2 HSPs)
chr4 (18-473)||(31603064-31603519)
chr4 (26-76)||(24613775-24613825)
[»] chr1 (4 HSPs)
chr1 (26-76)||(18190164-18190214)
chr1 (26-76)||(1486773-1486823)
chr1 (26-76)||(16297347-16297397)
chr1 (26-74)||(9709767-9709815)
[»] chr6 (4 HSPs)
chr6 (256-317)||(2326619-2326680)
chr6 (26-76)||(426578-426628)
chr6 (26-76)||(10294052-10294102)
chr6 (26-76)||(16766642-16766692)
[»] scaffold0053 (1 HSPs)
scaffold0053 (26-76)||(8743-8793)
[»] chr8 (4 HSPs)
chr8 (26-76)||(29510368-29510418)
chr8 (26-76)||(2572120-2572170)
chr8 (34-76)||(43737885-43737927)
chr8 (32-76)||(20785529-20785573)
[»] scaffold0475 (1 HSPs)
scaffold0475 (26-75)||(3262-3311)
[»] chr5 (2 HSPs)
chr5 (197-329)||(31159691-31159823)
chr5 (214-314)||(31198898-31198998)
[»] scaffold0021 (1 HSPs)
scaffold0021 (34-76)||(130427-130469)
[»] chr7 (4 HSPs)
chr7 (26-76)||(9778453-9778503)
chr7 (26-76)||(13300363-13300413)
chr7 (26-76)||(17851376-17851426)
chr7 (26-75)||(1885519-1885568)
[»] chr3 (4 HSPs)
chr3 (34-76)||(3164097-3164139)
chr3 (26-76)||(7171447-7171497)
chr3 (26-76)||(16000080-16000130)
chr3 (26-76)||(24205105-24205155)
[»] chr2 (1 HSPs)
chr2 (26-76)||(40361818-40361868)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 31603064 - 31603519
Alignment:
Q  18 gtgtgagc-tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcataccatatattgatctccaatcggtttaataagaggtttcaa 116  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  31603064 gtgtgagcgtgtcagtattcgtgtcgtgttcggtgtccatgtctgtatccatacttcatagcatatattgatctcca-tcggtttaataagaggtttcaa 31603162  T
Q  117 gtcacgtgaacttaacaaaattaaaatgataaaatggtttaaagaacataaaacttaaccatatattatcatgtggctctcagatgtttttaagaagttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31603163 gtcacgtgaacttaacaaaattaaaatgataaaatggtttaaagaacataaaacttaaccatatattatcatgtggctctcagatgtttttaagaagttc 31603262  T
Q  217 aagaatgagaaaggaaacttcaaagaaacacttgttggtgatgttgaggggatgctaagtttgtatgaagccacacatatgaggattcatggagaggaga 316  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31603263 aagaatgagcaaggaaacttcaaagaaacacttgttggtgatgttgaggggatgctaagtttgtatgaagccacacatatgaggattcatggagaggaga 31603362  T
Q  317 tattagatgatgcactttctttcacttccttacaccttgaaatgatgacaactcaattgagtccttctcttgctacaaaaattaatcatagcttaaagcg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  31603363 tattagatgatgcactttctttcacttccttacaccttgaaatgatgaccactcaattgagtccttctgttgctacaaaaatcaatcatagcttaaagcg 31603462  T
Q  417 gccactcttcaagaacttgcctaggcttgtggcaaggcattacatttccacttatga 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31603463 gccactcttcaagaacttgcctaggcttgtggcaaggcattacatttccacttatga 31603519  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 24613775 - 24613825
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| | |||||||||| | ||||||||||| ||||||||||||||||    
T  24613775 tgtcagtgttcgtgtcgtgtccagtgtccatgtccgtatccatgcttcata 24613825  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 18190164 - 18190214
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  18190164 tgtcagtatccgtgtcgtgtccggtgtccatgtccgtatccatgcttcata 18190214  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 1486773 - 1486823
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||||||||| | |||| ||| |||| ||||||||||||||||    
T  1486773 tgtcagtatccgtgtcgtatccggtatccgtgtccgtatccatgcttcata 1486823  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 16297347 - 16297397
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||||||||| |||||| || |||||||||| |||||| |||||||||    
T  16297347 tgtcagtatccgtatcgtgtccgatgtccatgtccgtatccgtgcttcata 16297397  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 9709815 - 9709767
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttca 74  Q
    ||||||| ||||||||||||  | ||||||||||||||||| |||||||    
T  9709815 tgtcagtgtccgtgtcgtgtctgatgtccatgtctgtatccgtgcttca 9709767  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 2326619 - 2326680
Alignment:
Q  256 gatgttgaggggatgctaagtttgtatgaagccacacatatgaggattcatggagaggagat 317  Q
    ||||||||||||||| |||| |||||||||||| ||||||||| | ||||||||||||||||    
T  2326619 gatgttgaggggatgttaagcttgtatgaagcctcacatatgatggttcatggagaggagat 2326680  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 426578 - 426628
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| |||||||||||| |||| ||| |||||||||||||||||||||    
T  426578 tgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttcata 426628  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 10294102 - 10294052
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||||||||||| |||||| | |||| |||||| |||||||||    
T  10294102 tgtcagtatccgtgtcgtgtccggtgttcgtgtccgtatccgtgcttcata 10294052  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 16766692 - 16766642
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| ||| |||||||| |||||||| |||| ||||||||||||||||    
T  16766692 tgtcagtgtccatgtcgtgtccggtgtccgtgtccgtatccatgcttcata 16766642  T

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Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 8793 - 8743
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| |||||||||||| |||||||| |||| ||||||||||||||||    
T  8793 tgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcata 8743  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 29510368 - 29510418
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| |||||||||||| ||||||||||||| |||||| |||||||||    
T  29510368 tgtcagtgtccgtgtcgtgtccggtgtccatgtcagtatccgtgcttcata 29510418  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 2572120 - 2572170
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||| ||||||||||||||| | |||||| |||| ||||||||||||||||    
T  2572120 tgtcggtatccgtgtcgtgtccagtgtccgtgtccgtatccatgcttcata 2572170  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 43737885 - 43737927
Alignment:
Q  34 tccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||| |||||||| ||||||||||| |||||||||    
T  43737885 tccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcata 43737927  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 20785529 - 20785573
Alignment:
Q  32 tatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||||| |||||||| |||| |||||| |||||||||    
T  20785529 tatccgtgtcgtgtacggtgtccgtgtccgtatccgtgcttcata 20785573  T

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Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 3311 - 3262
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcat 75  Q
    |||||||||||||||||||| |||||||| ||||| ||||| ||||||||    
T  3311 tgtcagtatccgtgtcgtgtccggtgtccgtgtctatatccgtgcttcat 3262  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 329
Target Start/End: Original strand, 31159691 - 31159823
Alignment:
Q  197 cagatgtttttaagaagttcaagaatgagaaaggaaacttcaaagaaacacttgttggtgatgttgaggggatgctaagtttgtatgaagccacacatat 296  Q
    ||||||| || || ||||||||| ||||| ||||||| || |   ||| | || ||| |||||||||||||||| |||| ||||||||||| |||||| |    
T  31159691 cagatgtattcaacaagttcaaggatgagcaaggaaaatttagtaaaagaattattgttgatgttgaggggatgttaagcttgtatgaagctacacatct 31159790  T
Q  297 gaggattcatggagaggagatattagatgatgc 329  Q
     | | |||| |||||||| || ||||| |||||    
T  31159791 catggttcaaggagaggatattttagaagatgc 31159823  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 31198898 - 31198998
Alignment:
Q  214 ttcaagaatgagaaaggaaacttcaaagaaacacttgttggtgatgttgaggggatgctaagtttgtatgaagccacacatatgaggattcatggagagg 313  Q
    |||||| ||||| | ||||||||||  |||| | || | || |||||||||||| || |||| |||||||||||||||||  | | | ||||||||||||    
T  31198898 ttcaaggatgaggatggaaacttcagtgaaagaattataggggatgttgaggggctgttaagcttgtatgaagccacacaactcatggttcatggagagg 31198997  T
Q  314 a 314  Q
    |    
T  31198998 a 31198998  T

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Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 130469 - 130427
Alignment:
Q  34 tccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||| |||||||| |||| ||||||||||||||||    
T  130469 tccgtgtcgtgtccggtgtccgtgtccgtatccatgcttcata 130427  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 9778503 - 9778453
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| |||||||||||| |||||||| |||| |||||| |||||||||    
T  9778503 tgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccgtgcttcata 9778453  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 13300413 - 13300363
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||||||||||||||||||||||||| |||   ||||| |||||||||    
T  13300413 tgtcagtatccgtgtcgtgttcggtgtccgtgttcatatccctgcttcata 13300363  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 17851426 - 17851376
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||| |||||| |||||||| |||||||| ||||||||||| |||||||||    
T  17851426 tgtcggtatccatgtcgtgtccggtgtccgtgtctgtatccgtgcttcata 17851376  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 1885568 - 1885519
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcat 75  Q
    |||| ||||| ||||||||| |||||||| ||||||||||| ||||||||    
T  1885568 tgtccgtatcagtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat 1885519  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 3164097 - 3164139
Alignment:
Q  34 tccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||| |||||||| ||||||||||| |||||||||    
T  3164097 tccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcata 3164139  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 7171497 - 7171447
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||||||||||||||||||| |||||||  |||| |||||| |||||||||    
T  7171497 tgtcagtatccgtgtcgtgtccggtgtctgtgtccgtatccgtgcttcata 7171447  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 16000080 - 16000130
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| || |||||||||||||||||| |||| |||||| |||||||||    
T  16000080 tgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatccgtgcttcata 16000130  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 24205105 - 24205155
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    ||||||| |||||||||||| |||||||| ||||||| ||| |||||||||    
T  24205105 tgtcagtgtccgtgtcgtgtccggtgtccgtgtctgtgtccgtgcttcata 24205155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 40361818 - 40361868
Alignment:
Q  26 tgtcagtatccgtgtcgtgttcggtgtccatgtctgtatccatgcttcata 76  Q
    |||| ||||| |||||||||||||| ||| |||| ||||||||||||||||    
T  40361818 tgtccgtatctgtgtcgtgttcggtatccgtgtccgtatccatgcttcata 40361868  T

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