View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_12 (Length: 458)
Name: NF18127_low_12
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 41626270 - 41625837
Alignment:
| Q |
10 |
aagaatattcatctgattaggaaaactttgatgaatcaactataacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatatatt |
109 |
Q |
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| T |
41626270 |
aagaatattcatctgattaggaaaactttgatgaatcaactaaaacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatatatt |
41626171 |
T |
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| Q |
110 |
tgataacggcaagaaaataagattcataaaactaaatagccgactctattttggatgataataatgattttgatatttagaatagaacaatgaagaatga |
209 |
Q |
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| T |
41626170 |
tgataacagcaagaaaataagattcataaaactacatagccgactctattttggatgataataatgattttgatatttagaatagaacaaagaagaatga |
41626071 |
T |
|
| Q |
210 |
attagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaatgttgccatctaacaactgaagaggagctaacattgtttgatg |
309 |
Q |
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| T |
41626070 |
attagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaaagttgctatctaacaactgaagaggagctaacattgtttgatg |
41625971 |
T |
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| Q |
310 |
aattggagtcacagctttgttatatagaattcataaatgattctttctttgttctaaggaagatgctaggaaggagtatcatagccgccaatccctcttt |
409 |
Q |
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| T |
41625970 |
aattggagtcacagctttgttatatagaattcataaatgattctttctttgtactaaggaagatgctaggaaggagtatcatagccgccaatccctcttt |
41625871 |
T |
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| Q |
410 |
cttattattttatcttatgatgatatatgatatg |
443 |
Q |
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| T |
41625870 |
cttattattttatcttatgatgatatatgatatg |
41625837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 41623306 - 41622869
Alignment:
| Q |
13 |
aatattcatctgattaggaaaactttgatgaatcaactataacatagacagaacaaaaacagaagcaggaaaagatagcatagttgattgatatatttga |
112 |
Q |
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| T |
41623306 |
aatattcatctgattaggaaaactttgatgaatcaactaaaccatagacagaacaaaaacagaagtaggaaaagatagcatagttgattgatatatttga |
41623207 |
T |
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| Q |
113 |
taacggcaagaaaataagattcataaaactaaatagccgactctatttt-ggatgataataatgattttgatatttagaatagaacaatgaagaatgaat |
211 |
Q |
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| T |
41623206 |
taacagcaagaaac-aagattcacaaaactaaatagacgactctatttttggatgataataatgatgatgatat----aatagaacaaagaagaatgaat |
41623112 |
T |
|
| Q |
212 |
tagagtaaaaatattgtagacactagtgaatataaccgtggacaaacctaggaaatgttgccatctaacaact--gaagaggagctaacattgtttgatg |
309 |
Q |
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| T |
41623111 |
tagagtaaaaatattgtagacactagtgaatataacttcggacaaacctaggaaaagttgctatccaacaactctgaagagga----aaattgtttgatg |
41623016 |
T |
|
| Q |
310 |
aattggagtcacagctttgttatatag-------------aattcataaatgattctttctttgttctaaggaagatgctaggaaggagtatcatagccg |
396 |
Q |
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| T |
41623015 |
acttggagtcacaactttgttatatagaattagaatatagaattcataaatgattctttctttgtactgaggaagctgctaggaaggagtatcatagccg |
41622916 |
T |
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| Q |
397 |
ccaatccctctttcttattattttatcttatgatgatatatgatatg |
443 |
Q |
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| T |
41622915 |
ccaacccctctttcttattatcttatcttgtgataatacatgatatg |
41622869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 258 - 399
Target Start/End: Complemental strand, 41619855 - 41619702
Alignment:
| Q |
258 |
cctaggaaatgttgccatctaacaactgaagaggagctaacattgtttgatgaattggagtcacag-ctttgttatatagaa-------ttcataaatga |
349 |
Q |
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||||||||| |||| ||||||||| ||||||||| ||| ||||||| ||||| ||||||||| | |||||||||||| || ||||||||||| |
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| T |
41619855 |
cctaggaaaagttgatatctaacaagtgaagaggaactagcattgttggatgatttggagtcatactctttgttatatataaattattattcataaatga |
41619756 |
T |
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| Q |
350 |
ttctttc-tttgttctaaggaagatgctaggaagga---gtatcatagccgcca |
399 |
Q |
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||||||| ||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
41619755 |
ttctttcttttgtactaaggaagctgctaggaaggaagggtatcatagccgcca |
41619702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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