View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_13 (Length: 456)
Name: NF18127_low_13
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 49 - 399
Target Start/End: Complemental strand, 30163415 - 30163060
Alignment:
| Q |
49 |
aaagcattgcaatttattttagtggaagaagcattacaatttttaacatgttcatattataacttgagagaaaattattgcaaaatggaaacgtacgtca |
148 |
Q |
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| T |
30163415 |
aaagcattgcaatttattttagtggaagaagcattacaatttttaacatgttcatattataacttgagagaaaattattgcaaaatggaaacgtacgtca |
30163316 |
T |
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| Q |
149 |
tttatccaaatgaacgatgaagacaattatctttatttatataaaggatagatttgagtttgagcagtgtcaccttgaaaatgaaatatatactaattaa |
248 |
Q |
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| T |
30163315 |
tttatccaaatgaacgatgaagacaattatctttatttatataaaggatagatttgagtttgagcagtgtcaccttgaaaatgaaatatatactaattaa |
30163216 |
T |
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| Q |
249 |
gctatggcggagttgctaaacaaactgcagcttataatataa-----tatagataaagtgttcatcaataattagtagtacgaagttatgatatcatcat |
343 |
Q |
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| T |
30163215 |
gctatggcggagttgctaaacaaactgcagcttataatataatataatatagataaagtgttcatcaataattagtagtacgaagttatgatatcatcat |
30163116 |
T |
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| Q |
344 |
ccatcaatgcatgaaaaattcaaattaattagaaattattatgctgattaaggtag |
399 |
Q |
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| T |
30163115 |
ccatcaatgcatgaaaaattcaaattaattagaaattattatgctgattaaggtag |
30163060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 446
Target Start/End: Complemental strand, 30163059 - 30163027
Alignment:
| Q |
414 |
tactatatattaatatacaacttgctgcctatg |
446 |
Q |
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| T |
30163059 |
tactatatattaatatacaacttgctgcctatg |
30163027 |
T |
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