View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_15 (Length: 431)
Name: NF18127_low_15
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 317
Target Start/End: Original strand, 38743845 - 38744127
Alignment:
| Q |
34 |
tttttgagaatgaagtgaagtaaacacactaccgtgtgttattatatagtgtaggtgatggggtgtttgtttaagattcagatattttagacggtttaga |
133 |
Q |
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| T |
38743845 |
tttttgaatatgaagtgaagtaaacacactaccgtgtattattatatag-gtagttgatggggtgtttgtttgagattcagatattttagacggtttaga |
38743943 |
T |
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| Q |
134 |
nnnnnnnagaaggtaacttggacattgttattgtgattgagcggttgagattttctctttggttgttatattttttgaaaaaatatttggtttgttatat |
233 |
Q |
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| T |
38743944 |
tttttttagaaggtaacttgtacattgttattgtgattgaacggttgagattttctctttggttgttatattttttgaaaaaatctttgg-ttgttatat |
38744042 |
T |
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| Q |
234 |
gaaaaagatctgttcttcaataaaatatgaaaaagatttgttacgattc-tactgaattttagccaatgaccaagtatttgatag |
317 |
Q |
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| T |
38744043 |
gaaaaagatctgttcttcaataaaatatgaaaaagatttgttacgattcttactgaattttcgctaatgaccaagtatttgatag |
38744127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 38788581 - 38788333
Alignment:
| Q |
20 |
agagatatgaaccgtttttgagaatgaagtgaagtaaacacactaccgtgtgttattatatagtgtaggtgatggggtgtttgtttaagattcagatatt |
119 |
Q |
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| T |
38788581 |
agagatatgaaccgtttttgagaatgaagtgaagtaaacacactaccgtgtgttattatatagtgtaggtgatggggtatttgttttagattcagatatt |
38788482 |
T |
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| Q |
120 |
ttagacggtttagannnnnnnagaaggtaacttggacattgttattgtgattgagcggttgagattttctctttggttgttatattttttgaaaaaatat |
219 |
Q |
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| T |
38788481 |
ttagattgtttagatttttttagaaggtaacttgtacattgtt-------ttagacggttgagattttctctttggttgttatattttttgacaaaatct |
38788389 |
T |
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| Q |
220 |
ttggtttgttatatgaaaaagatctgttcttc----aataaaatatgaaaaagattt |
272 |
Q |
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| T |
38788388 |
ttgg-ttgttatatgaaaaagatatgtacttcaaaaaataaaatatgaaaaagattt |
38788333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 38782364 - 38782192
Alignment:
| Q |
71 |
gttattatatagtgtaggtgatggggtgtttgtttaagattcagatattttagacggtttagannnnnnnagaaggtaacttggacattgttat---tgt |
167 |
Q |
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| T |
38782364 |
gttattatatagtgtaggcgattgtatatttgtttgagattgggatattttagacggtttagatttttctggaaggtaacttgta-attattatcagtgt |
38782266 |
T |
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| Q |
168 |
gattgagcggttgagattttctctttggttgttatattttttgaaaaaatatttggtttgttatatgaaaaagat |
242 |
Q |
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| T |
38782265 |
aattgcacggctgagatttgttctttggttcttatattttttgacaagatcttt-gtttgttatatgaaaaagat |
38782192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 381
Target Start/End: Original strand, 38744174 - 38744202
Alignment:
| Q |
353 |
ccacagattatacactatgtaaaagttcg |
381 |
Q |
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| T |
38744174 |
ccacagattatacactatgtaaaagttcg |
38744202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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