View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18127_low_16 (Length: 426)

Name: NF18127_low_16
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18127_low_16
NF18127_low_16
[»] chr5 (3 HSPs)
chr5 (109-387)||(12404798-12405076)
chr5 (145-188)||(39097188-39097231)
chr5 (144-185)||(10957384-10957425)
[»] chr7 (5 HSPs)
chr7 (143-188)||(48158813-48158858)
chr7 (146-188)||(41841088-41841130)
chr7 (143-188)||(45004907-45004952)
chr7 (144-188)||(22310784-22310828)
chr7 (140-184)||(41360005-41360049)
[»] chr2 (4 HSPs)
chr2 (145-188)||(33502967-33503010)
chr2 (143-188)||(9943345-9943390)
chr2 (143-184)||(36374238-36374279)
chr2 (145-188)||(15928552-15928595)
[»] chr6 (7 HSPs)
chr6 (143-189)||(34620808-34620854)
chr6 (143-189)||(34748245-34748291)
chr6 (142-188)||(10400814-10400860)
chr6 (158-188)||(33136601-33136631)
chr6 (143-188)||(25195482-25195527)
chr6 (144-188)||(26550442-26550486)
chr6 (190-302)||(30582846-30582957)
[»] chr4 (4 HSPs)
chr4 (143-188)||(46344949-46344994)
chr4 (143-185)||(39438710-39438752)
chr4 (143-219)||(27967925-27967999)
chr4 (143-188)||(35064985-35065030)
[»] chr3 (2 HSPs)
chr3 (143-188)||(52925729-52925774)
chr3 (143-189)||(3776461-3776507)
[»] chr1 (2 HSPs)
chr1 (143-188)||(20720739-20720783)
chr1 (146-188)||(36780235-36780277)
[»] chr8 (3 HSPs)
chr8 (143-188)||(39648263-39648308)
chr8 (144-188)||(28805126-28805170)
chr8 (144-188)||(42455835-42455879)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 109 - 387
Target Start/End: Complemental strand, 12405076 - 12404798
Alignment:
Q  109 aacttagtacatgtttgtttccatttctttgaggcaaaattgattatgaaggtgtataattgattttgacatgtttggttctggattagaaatgactttg 208  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12405076 aacttagtacatgtttgtttccatttctttgagataaaattgattatgaaggtgtataattgattttgacatgtttggttctggattagaaatgactttg 12404977  T
Q  209 cctcaataattcattctaacttaaagtttgaacttgtagcttttgcctccaatcatgatttccaccctcaaattgatggttcaactcattttcagtaaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12404976 cctcaataattcattctaacttaaagtttgaacttgtagcttttgcctccaaacatgatttccaccctcaaattgatggttcaactcattttcagtaaat 12404877  T
Q  309 atatacaatcataattcatgtttatctaaaactaattttgaactaaaatcaattcaaccaaaaccattttcacgtaaat 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404876 atatacaatcataattcatgtttatctaaaactaattttgaactaaaatcaattcaaccaaaaccattttcacgtaaat 12404798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 39097188 - 39097231
Alignment:
Q  145 aaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||||  ||||||| |||||||||||||||||||||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggtt 39097231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 10957384 - 10957425
Alignment:
Q  144 aaaattgattatgaaggtgtataattgattttgacatgtttg 185  Q
    |||||||||||  |||||||| ||||||||||||||||||||    
T  10957384 aaaattgattaaaaaggtgtagaattgattttgacatgtttg 10957425  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 48158813 - 48158858
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||    
T  48158813 caaaattgattatgaaggcgtaaaattgattttgacatgtttggtt 48158858  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 41841088 - 41841130
Alignment:
Q  146 aattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| ||||||| |||||| ||||||||||||||||    
T  41841088 aattgattatggaggtgtaaaattgactttgacatgtttggtt 41841130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 45004907 - 45004952
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| |  ||||||| |||||||||||||||||||||||    
T  45004907 caaaattgattctagaggtgtagaattgattttgacatgtttggtt 45004952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 22310828 - 22310784
Alignment:
Q  144 aaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||| | ||| ||||||||||||||||| ||||||||||    
T  22310828 aaaattgattctaaagatgtataattgattttgatatgtttggtt 22310784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 41360005 - 41360049
Alignment:
Q  140 aggcaaaattgattatgaaggtgtataattgattttgacatgttt 184  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||    
T  41360005 aggcaaaattaattctaaagatgtataattgattttgacatgttt 41360049  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 33503010 - 33502967
Alignment:
Q  145 aaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  33503010 aaattgattctgaaggtgtaaaattgattttgacatgtttggtt 33502967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 9943345 - 9943390
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||||    
T  9943345 caaaattgattctgaaggtgtaaaattgattttaacatgtttggtt 9943390  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 36374238 - 36374279
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgttt 184  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  36374238 caaaattgattttaaaggtgtataattgattttgacatgttt 36374279  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 15928595 - 15928552
Alignment:
Q  145 aaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||| || ||||||| |||||||||||||||||||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggtt 15928552  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 34620808 - 34620854
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggttc 189  Q
    ||||||||||| | |||||||| ||||||||||||||||||||||||    
T  34620808 caaaattgattctaaaggtgtagaattgattttgacatgtttggttc 34620854  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 34748245 - 34748291
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggttc 189  Q
    ||||||||||| | |||||||| ||||||||||||||||||||||||    
T  34748245 caaaattgattctaaaggtgtagaattgattttgacatgtttggttc 34748291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 10400860 - 10400814
Alignment:
Q  142 gcaaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||||| |  |||||||||||||||||||| ||||||||||    
T  10400860 gcaaaattgattctagaggtgtataattgattttgatatgtttggtt 10400814  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 188
Target Start/End: Complemental strand, 33136631 - 33136601
Alignment:
Q  158 aggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||||||||||||||||||||||||    
T  33136631 aggtgtataattgattttgacatgtttggtt 33136601  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 25195527 - 25195482
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| || | |||||||||||||| ||||||||||||||    
T  25195527 caaaattgattctggatgtgtataattgattctgacatgtttggtt 25195482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 26550442 - 26550486
Alignment:
Q  144 aaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||| |||||||  ||||||| |||||||||||||||||||||||    
T  26550442 aaaaatgattatagaggtgtagaattgattttgacatgtttggtt 26550486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 30582957 - 30582846
Alignment:
Q  190 tggattagaaatgactttgcctcaataattcattctaacttaaagtttgaacttgtagcttttgcctccaatcatgatttccaccctcaaattgatggtt 289  Q
    |||||||||| ||| |||| ||| | |||| |||||||||| ||| | || ||||||||||||| |||||| ||||||||  || |||| ||| || |||    
T  30582957 tggattagaattga-tttgactctagaattgattctaacttgaagatggagcttgtagcttttgtctccaaacatgatttatacactcacatttattgtt 30582859  T
Q  290 caactcattttca 302  Q
     |||||| |||||    
T  30582858 taactcaatttca 30582846  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 46344994 - 46344949
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||||||| |||||||||||| ||| ||||||||||||||    
T  46344994 caaaattgattatggaggtgtataattaattctgacatgtttggtt 46344949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 39438710 - 39438752
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttg 185  Q
    ||||||||||| || ||||||| ||||||||||||||||||||    
T  39438710 caaaattgattttggaggtgtaaaattgattttgacatgtttg 39438752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 27967999 - 27967925
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggttctggattagaaatgactttgcctcaataatt 219  Q
    |||||||||||||  ||||||| |||||||| |||||||| ||||  |||| ||||| ||| |||||||||| ||||    
T  27967999 caaaattgattatataggtgtagaattgattatgacatgtatggt--tggagtagaattgattttgcctcaagaatt 27967925  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 35064985 - 35065030
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||||||| ||||||| |||||||| |||||| |||||||    
T  35064985 caaaattgattatggaggtgtagaattgattatgacatttttggtt 35065030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 52925774 - 52925729
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||    
T  52925774 caaaattgattctagaggtgtataattgattttgacatgtttggtt 52925729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 3776461 - 3776507
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggttc 189  Q
    |||||||| ||||  ||||||| ||||||||||||||||||||||||    
T  3776461 caaaattggttatagaggtgtagaattgattttgacatgtttggttc 3776507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 20720739 - 20720783
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||    
T  20720739 caaaattgattat-aaggtgtagaattgattttgacatgtttggtt 20720783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 36780277 - 36780235
Alignment:
Q  146 aattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| ||||||| |||||||||||| ||||||||||    
T  36780277 aattgattatggaggtgtagaattgattttgatatgtttggtt 36780235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 39648308 - 39648263
Alignment:
Q  143 caaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||| |  || ||||||||||||||||||||||||||||    
T  39648308 caaaattgattctagagatgtataattgattttgacatgtttggtt 39648263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 28805126 - 28805170
Alignment:
Q  144 aaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    |||||||||| ||||||||||||||||| ||||  ||||||||||    
T  28805126 aaaattgattttgaaggtgtataattgactttggtatgtttggtt 28805170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 42455835 - 42455879
Alignment:
Q  144 aaaattgattatgaaggtgtataattgattttgacatgtttggtt 188  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||    
T  42455835 aaaattgattatggagcagtagaattgattttgacatgtttggtt 42455879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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