View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18127_low_21 (Length: 409)

Name: NF18127_low_21
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18127_low_21
NF18127_low_21
[»] chr4 (3 HSPs)
chr4 (7-399)||(51295333-51295710)
chr4 (327-399)||(5653162-5653234)
chr4 (327-363)||(54296616-54296652)
[»] chr6 (5 HSPs)
chr6 (327-399)||(33869416-33869488)
chr6 (328-399)||(15866750-15866821)
chr6 (328-399)||(15868562-15868633)
chr6 (328-399)||(33866269-33866340)
chr6 (328-369)||(24544818-24544859)
[»] chr7 (5 HSPs)
chr7 (328-399)||(37405440-37405511)
chr7 (335-399)||(21632958-21633022)
chr7 (341-399)||(34844223-34844281)
chr7 (352-399)||(21633205-21633252)
chr7 (352-396)||(21631244-21631288)
[»] chr1 (6 HSPs)
chr1 (328-399)||(3284672-3284743)
chr1 (327-399)||(9312199-9312271)
chr1 (328-399)||(3282971-3283042)
chr1 (328-399)||(9310582-9310653)
chr1 (327-399)||(902246-902318)
chr1 (330-362)||(41892295-41892327)
[»] chr5 (1 HSPs)
chr5 (329-399)||(39787050-39787120)
[»] chr8 (4 HSPs)
chr8 (328-373)||(14939709-14939754)
chr8 (328-373)||(19473726-19473771)
chr8 (328-373)||(19544651-19544696)
chr8 (328-373)||(19588000-19588045)
[»] scaffold0251 (1 HSPs)
scaffold0251 (341-399)||(6396-6454)
[»] scaffold0057 (1 HSPs)
scaffold0057 (328-373)||(58980-59025)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 51295710 - 51295333
Alignment:
Q  7 aatatatcatcaaacttcatcgatttggaccatccacaaaaatatccacacatcaattctaatatgaaaaattaatatgatatagaataatcaattatga 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51295710 aatatatcatcaaacttcatcgatttggaccgtccacaaaaatatccacacatcaattctaatataaaaaattaatatgatatagaataatcaattatga 51295611  T
Q  107 caagtaagaccaaatatagaagttcacccctctatctcacaataagtgacacatgatcaaactcaataatgtttggcatgaaagggtgaaatgagaaaaa 206  Q
    ||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51295610 caagtaagaccaaatatagaagttcacccc---------------gtgacacatgatcaaactcaataatgtttggcgtgaaagggtgaaatgagaaaaa 51295526  T
Q  207 cccatatacttatggcatctctttaagattttcgtttggtgtgttgatacctactttagataaaagagatcgttaatttttctttccctttgttgtgtag 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  51295525 cccatatacttatggcatctctttaagattttcgtttggtgtgttgatacctactttagataaaagagatcgttaacttttctttccctttgttgtgtag 51295426  T
Q  307 tgctttataacaagtaatcggtgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||  |||||| |||| ||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  51295425 tgctccataacaggtaaccggtgttagtaattatggaatcctaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcat 51295333  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 327 - 399
Target Start/End: Original strand, 5653162 - 5653234
Alignment:
Q  327 gtgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||||||||||| | || ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  5653162 gtgttagtaatcatggaatgccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcat 5653234  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 54296652 - 54296616
Alignment:
Q  327 gtgttagtaatcatggaatcctaaagataaagatcag 363  Q
    ||||||||||||||||||||| || ||||||||||||    
T  54296652 gtgttagtaatcatggaatccaaaggataaagatcag 54296616  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 33869488 - 33869416
Alignment:
Q  327 gtgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  33869488 gtgttagtaatcaaggaatcccaaagataaagatcatagtgatcagctagaaagagagcataggtgtattcat 33869416  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 15866821 - 15866750
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||| || ||||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  15866821 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcat 15866750  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 15868633 - 15868562
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||| || ||||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  15868633 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcat 15868562  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 33866340 - 33866269
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||| || ||| ||||||| |||||||||||| ||||||| |||||||||||||||    
T  33866340 tgttagtaatcaaggaatcccaaggattaagatcatagtgatcagctagaaagagagcataggtgtattcat 33866269  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 24544859 - 24544818
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgat 369  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  24544859 tgttagtaatcatggaatcccaaggataaagatcatagtgat 24544818  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 399
Target Start/End: Original strand, 37405440 - 37405511
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||| || ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  37405440 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcat 37405511  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 399
Target Start/End: Original strand, 21632958 - 21633022
Alignment:
Q  335 aatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||||| |  ||||||||||| ||||||||||| |||||||| |||||||||||||||    
T  21632958 aatcatggaatcccatggataaagatcacagtgatcagctgaaaagagagcataggtgtattcat 21633022  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 34844281 - 34844223
Alignment:
Q  341 ggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||| || ||||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  34844281 ggaatcccaaggataaagatcatagtgatcaactagaaagagagcataggtgtattcat 34844223  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 21633205 - 21633252
Alignment:
Q  352 gataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||| |||||||||||| ||||||| ||||| |||||||||    
T  21633205 gataaagatcatagtgatcagctagaaagagagcatagatgtattcat 21633252  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 21631244 - 21631288
Alignment:
Q  352 gataaagatcagagtgatcagctaaaaagagaacataggtgtatt 396  Q
    ||||||||||| | |||||||||| ||||||| ||||||||||||    
T  21631244 gataaagatcatattgatcagctagaaagagagcataggtgtatt 21631288  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 3284743 - 3284672
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||| || ||||||||||| |||||||||||| ||||||| |||||||||||||||    
T  3284743 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcataggtgtattcat 3284672  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 9312271 - 9312199
Alignment:
Q  327 gtgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||||| ||||||| || ||||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  9312271 gtgttagtaatcaaggaatcccaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcat 9312199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 3283042 - 3282971
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||| || ||||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  3283042 tgttagtaatcaaggaatcccaaggataaagatcatagtgatcaactagaaagagagcataggtgtattcat 3282971  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 399
Target Start/End: Complemental strand, 9310653 - 9310582
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    |||||||||||| ||||||  || ||||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  9310653 tgttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcat 9310582  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 902318 - 902246
Alignment:
Q  327 gtgttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||||| | ||| | || ||||||||||| | ||||||| || ||||||| |||||||||||||||    
T  902318 gtgttagtaatcaagaaattccaaggataaagatcataatgatcagttagaaagagagcataggtgtattcat 902246  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 362
Target Start/End: Complemental strand, 41892327 - 41892295
Alignment:
Q  330 ttagtaatcatggaatcctaaagataaagatca 362  Q
    ||||||||||||||||||||| |||||||||||    
T  41892327 ttagtaatcatggaatcctaaggataaagatca 41892295  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 399
Target Start/End: Original strand, 39787050 - 39787120
Alignment:
Q  329 gttagtaatcatggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||||||| ||||||  || ||||||||||| |||||||||||| ||||||| |||| ||||||||||    
T  39787050 gttagtaatcaaggaatctcaaggataaagatcatagtgatcagctagaaagagagcatatgtgtattcat 39787120  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 14939754 - 14939709
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagc 373  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  14939754 tgttagtaatcatggaatcctaaggataaagatcatagtgatcagc 14939709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 19473771 - 19473726
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagc 373  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  19473771 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagc 19473726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 19544696 - 19544651
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagc 373  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  19544696 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagc 19544651  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 19588000 - 19588045
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagc 373  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  19588000 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagc 19588045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 341 - 399
Target Start/End: Complemental strand, 6454 - 6396
Alignment:
Q  341 ggaatcctaaagataaagatcagagtgatcagctaaaaagagaacataggtgtattcat 399  Q
    ||||||| || ||||||||||| |||||||||||| ||||||| ||||| |||||||||    
T  6454 ggaatcccaaggataaagatcatagtgatcagctagaaagagagcatagatgtattcat 6396  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 373
Target Start/End: Complemental strand, 59025 - 58980
Alignment:
Q  328 tgttagtaatcatggaatcctaaagataaagatcagagtgatcagc 373  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||    
T  59025 tgttagtaatcatggaatcccaaggataaagatcatagtgatcagc 58980  T

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