View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_23 (Length: 390)
Name: NF18127_low_23
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_23 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 37896654 - 37896265
Alignment:
| Q |
1 |
tgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgcca |
100 |
Q |
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| T |
37896654 |
tgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgcca |
37896555 |
T |
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| Q |
101 |
caattgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaag |
200 |
Q |
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| T |
37896554 |
caattgttatctaaatttgttgtaacttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaag |
37896455 |
T |
|
| Q |
201 |
aagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcatgcaactgt |
300 |
Q |
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| T |
37896454 |
aagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcatgcaactgt |
37896355 |
T |
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| Q |
301 |
gaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaaccttt |
390 |
Q |
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| T |
37896354 |
gaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagaaattgaaagggcaataagtgaaatgaaaaatgaaccttt |
37896265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 37958548 - 37958937
Alignment:
| Q |
1 |
tgtaaaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgcca |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
37958548 |
tgtaaaagcaactattgtttttgcaaaagaagaaattgagagaatgaaaatatgggcacttgatcaatggaagaaaaatgattgtgaagttcaagcgcca |
37958647 |
T |
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| Q |
101 |
caattgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaag |
200 |
Q |
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| T |
37958648 |
caatttttatctaaatttgttgtaacttgtggtttcatttgggctagtatggttaaaacaagatgtagaaaggaaaatgataacgatgatgatgaaaaag |
37958747 |
T |
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| Q |
201 |
aagagtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcatgcaactgt |
300 |
Q |
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| T |
37958748 |
aggagtattttggttttccaggtgattgtagagaaagacttgggtacaaaataccagaggggtattttgggaattgtctaacattatgtcatgcaactat |
37958847 |
T |
|
| Q |
301 |
gaagagaaaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaaccttt |
390 |
Q |
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| T |
37958848 |
gaagagaaaggatatgaagggggaagatggttatgtgaatgctgttaaggtaattgaaagggtaataagtgaaatgaaaaatgaaccttt |
37958937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 388
Target Start/End: Original strand, 37952817 - 37953191
Alignment:
| Q |
8 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaattgt |
107 |
Q |
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|||| ||||||||| | |||||| ||||| ||| | ||||||| ||||| | | ||| ||||||||||||| ||||| ||| | ||||| |||||||| |
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| T |
37952817 |
gcaattattgttttcggaaaagaagaaatcgaggggatgaaaaaatgggtattgaatgaatggaagaaaaaagatcaagaaatccaagcaccacaatttc |
37952916 |
T |
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| Q |
108 |
tatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaagagta |
207 |
Q |
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| T |
37952917 |
tatctaaatatgttgtaacttgtgcttttgtttgggttagtttggttaaagcaatgcatagaagt---aatcataat-at--tgatgaaaaagacgagta |
37953010 |
T |
|
| Q |
208 |
ttttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgtttaacattatgtcatgcaactgtgaagaga |
307 |
Q |
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|||| |||| |||||||||| ||||| ||||| ||||||| |||||| ||||||||||| ||||| |||||| | || ||||||||| |||||||| |
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| T |
37953011 |
tttttgtttcacaggtgattgcagagacagactagggtacacaataccggaggggtatttcggaaactgtttagcgtttaatcatgcaacgatgaagaga |
37953110 |
T |
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| Q |
308 |
aaggttatgaagggggaagatggttttgtgaatggtgttaaagtaattgaaagggcaataagtgaaatgaaaaatgaacct |
388 |
Q |
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| | | |||| || ||||||||||||||||||| |||||| |||||||| | |||||||| ||| ||||||||||||||| |
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| T |
37953111 |
agagatgtgaaaggagaagatggttttgtgaatgctgttaaggtaattgagaaggcaataactgagatgaaaaatgaacct |
37953191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 28166359 - 28166284
Alignment:
| Q |
5 |
aaagcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
80 |
Q |
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||||||| ||||||||||| |||||| ||||||||| | ||||||| || | ||| ||||||||||||||||||| |
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| T |
28166359 |
aaagcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg |
28166284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 39712434 - 39712171
Alignment:
| Q |
13 |
tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatgatcat---gaagttcaagcgccacaattgtta |
109 |
Q |
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||||| ||||| |||||| ||||||||| | ||||||| ||||| || ||||||||||||||||||||| || ||| | | | |||| |||| || |
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| T |
39712434 |
tattgcttttggaaaagaagaaattgaggggatgaaaaaatgggtgctgaatcaatggaagaaaaatgataataatgaaatcaacgtgccaaaatttata |
39712335 |
T |
|
| Q |
110 |
tctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgata---atgatgatgatgaaaaagaagagt |
206 |
Q |
| |
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|||||||||||||||| || || ||| ||||| ||||| ||||| || ||| ||| |||||| ||| | ||||||||||||||||||| |||| |
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| T |
39712334 |
tctaaatttgttgtaacttctgcttttgtttgggctagtatggttgaagcaatgcataaaaatgatgatggtggtgatgatgatgatgaaaaagatgagt |
39712235 |
T |
|
| Q |
207 |
attttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttgg |
270 |
Q |
| |
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| T |
39712234 |
acttttgtttcacatgtgattgcagagatagacttgggtactcaataccagaggggtattttgg |
39712171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 11528050 - 11527783
Alignment:
| Q |
8 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaa---tatgggcacttaatcaatggaagaaaaatgatcatgaagttcaagcgccacaat |
104 |
Q |
| |
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|||| ||||||||||| |||||| ||||||||||| ||||||| |||| || | ||||||||||||||||||||| | ||| | | |||||||||| |
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| T |
11528050 |
gcaattattgtttttggaaaagaagaaattgagaggatgaaaaaaatatgtgc--tgaatcaatggaagaaaaatgataacgaaatcaacgcgccacaat |
11527953 |
T |
|
| Q |
105 |
tgttatctaaatttgttgtaatttgtggtttcatttggtctagtttggttaaaacaagatatagaaatgaaaatgataatgatgatgatgaaaaagaaga |
204 |
Q |
| |
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| |||||||||||||||||| ||||| |||| ||||| ||||| | |||||||| | |||| ||| ||| |||||| || || ||||| || |
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| T |
11527952 |
ttctatctaaatttgttgtaacttgtgctttcgtttgggctagtataactaaaacaatacatag------aaacgatgatgatggcgacgataaagatga |
11527859 |
T |
|
| Q |
205 |
gtattttcgttttgcaggtgattgtagagatagacttgggtacaaaataccagaggggtattttggaaattgttta |
280 |
Q |
| |
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|||||| ||| || ||||||| |||||||||||||| || ||||||||||||||||||||| || |||||| |
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| T |
11527858 |
atatttttctttcacatgtgattgcagagatagacttggttatccaataccagaggggtattttgggaactgttta |
11527783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 38757332 - 38757265
Alignment:
| Q |
13 |
tattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
80 |
Q |
| |
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||||||||||| |||||| ||||||||| | ||||||| || ||||| ||||||||||||||||||| |
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| T |
38757332 |
tattgtttttgaaaaagaagaaattgaggggatgaaaaaatatgcactgaatcaatggaagaaaaatg |
38757265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 40768307 - 40768235
Alignment:
| Q |
8 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
80 |
Q |
| |
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|||| ||||||||||| |||||| ||||||||| | ||||||| || | ||| ||||||||||||||||||| |
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| T |
40768307 |
gcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtactgaatcaatggaagaaaaatg |
40768235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 11149376 - 11149448
Alignment:
| Q |
8 |
gcaactattgtttttgcaaaagaggaaattgagagaatgaaaatatgggcacttaatcaatggaagaaaaatg |
80 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| | ||||||| || | || ||||||||||||||||||| |
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| T |
11149376 |
gcaattattgtttttggaaaagaagaaattgaggggatgaaaaaatatgtgctgaatcaatggaagaaaaatg |
11149448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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