View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18127_low_24 (Length: 375)
Name: NF18127_low_24
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_24 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 108 - 356
Target Start/End: Complemental strand, 24221262 - 24221013
Alignment:
| Q |
108 |
tacagaccagagttaaatgtagagtctttaatcaacttgatcatttggagaaggtttgcaaaaacaaaagaa-ccaataggaataacaacccagagttgt |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
24221262 |
tacagaccagagtcaaatgtagagtctttaatcaacttgatcatttggagaaggtttgcaaaaacaaaagaaaccaataggaataacaacctagagttgt |
24221163 |
T |
|
| Q |
207 |
tgagcctcacaaagaagatgaggaacaattgtttaaggctttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatgccctacgac |
306 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
24221162 |
tgagccgcaccaagaagaggaggaacaattgtttaaggctttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatgccctatgac |
24221063 |
T |
|
| Q |
307 |
taacaatgttagtttttctagagaacttgatgagttttttactccaaatc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
24221062 |
taacaatgttagtttttctagagaacttgacgagtcttttactccaaatc |
24221013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 24222041 - 24221941
Alignment:
| Q |
14 |
agacaaaaggcaaaacttcaatagttttgagaaaaagaagttttcgccctcccacattgcaaaaaagatacttattttgaaaaatttatattggtacaga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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|
| T |
24222041 |
agacaaaaggcaaaacttcaatagttttgagaaaaagaagttttcgccctcccacattgcaaaaaagatacttattttgaaaaagttttattggtacaga |
24221942 |
T |
|
| Q |
114 |
c |
114 |
Q |
| |
|
| |
|
|
| T |
24221941 |
c |
24221941 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 354
Target Start/End: Original strand, 44733011 - 44733340
Alignment:
| Q |
36 |
agttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtc |
133 |
Q |
| |
|
||||||| | ||||||||||| |||| | |||||||||||||| |||||| |||| || || ||| | |||||| || |||| |||||||||||||| |
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|
| T |
44733011 |
agttttggggaaaagaagtttccgccgtgtccacattgcaaaaaggatactcatttagacaagttt-tgttggtataggccaggagttaaatgtagagct |
44733109 |
T |
|
| Q |
134 |
tttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaac |
232 |
Q |
| |
|
| ||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||| ||||| || | |||||||||| ||| ||||||||||||| | |
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|
| T |
44733110 |
tgtaaccaacttggtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaacaagcccgtgttgttgagcaccaccaagaagatgaggagc |
44733209 |
T |
|
| Q |
233 |
aattgtttaaggct--ttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatgc------cctacgactaacaatgttagtttttc |
324 |
Q |
| |
|
|||||||||||||| |||||||| | | |||||||||||||||||||||||||||||| | ||||| | || |||||||||||||||||||| |
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|
| T |
44733210 |
aattgtttaaggcttcttgctatttagcatgtagtagcaaagaaacatggctaatagatagtggatgcaccaatcatatgactaacaatgttagtttttt |
44733309 |
T |
|
| Q |
325 |
tagagaacttgatgagt-tttttactccaaa |
354 |
Q |
| |
|
|| |||||||||||| | ||||||||||||| |
|
|
| T |
44733310 |
taaagaacttgatgaatctttttactccaaa |
44733340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 354
Target Start/End: Original strand, 32799174 - 32799503
Alignment:
| Q |
36 |
agttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtc |
133 |
Q |
| |
|
||||||| ||||||||||||| | || | |||||||||||||| |||||| |||| || || ||| | |||||| || |||| |||||||||||||| |
|
|
| T |
32799174 |
agttttgggaaaaagaagtttccaccgtgtccacattgcaaaaaggatactcatttagacaagttt-tgttggtataggccaggagttaaatgtagagct |
32799272 |
T |
|
| Q |
134 |
tttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaac |
232 |
Q |
| |
|
| ||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||| || || || |||||||||||| ||| ||||||||||||| | |
|
|
| T |
32799273 |
tgtaaccaacttggtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaagaagcccgagttgttgagcaccaccaagaagatgaggagc |
32799372 |
T |
|
| Q |
233 |
aattgtttaaggct--ttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatgc------cctacgactaacaatgttagtttttc |
324 |
Q |
| |
|
|||||||||||||| |||||||| | | |||||||||||||||||||||||||||||| | ||||| | || |||||||||||||||||||| |
|
|
| T |
32799373 |
aattgtttaaggcttcttgctatttagcatgtagtagcaaagaaacatggctaatagatagtggatgcaccaatcatatgactaacaatgttagtttttt |
32799472 |
T |
|
| Q |
325 |
tagagaacttgatg-agttttttactccaaa |
354 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| |
|
|
| T |
32799473 |
taaagaacttgatgaatttttttactccaaa |
32799503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 36 - 354
Target Start/End: Original strand, 45337427 - 45337756
Alignment:
| Q |
36 |
agttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtc |
133 |
Q |
| |
|
||||||| ||||||||||||| | || | |||||||||||||| |||||| |||| || || ||| | |||||| || |||| |||||||||||||| |
|
|
| T |
45337427 |
agttttgggaaaaagaagtttccaccgtgtccacattgcaaaaaggatactcatttagacaagttt-tgttggtataggccaggagttaaatgtagagct |
45337525 |
T |
|
| Q |
134 |
tttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaac |
232 |
Q |
| |
|
| ||| ||||||| |||| |||||||||||||||||||||||| ||||| ||||| || || || |||||||||||| ||| ||||||||||||| | |
|
|
| T |
45337526 |
tgtaaccaacttggtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaagaagcccgagttgttgagcaccaccaagaagatgaggagc |
45337625 |
T |
|
| Q |
233 |
aattgtttaaggct--ttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatgc------cctacgactaacaatgttagtttttc |
324 |
Q |
| |
|
|||||||||||||| |||||||| | | |||||||||||||||||||||||||||||| | ||||| | || |||||||||||||||||||| |
|
|
| T |
45337626 |
aattgtttaaggcttcttgctatttagcatgtagtagcaaagaaacatggctaatagatagtggatgcaccaatcatatgactaacaatgttagtttttt |
45337725 |
T |
|
| Q |
325 |
tagagaacttgatg-agttttttactccaaa |
354 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| |
|
|
| T |
45337726 |
taaagaacttgatgaatttttttactccaaa |
45337756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 354
Target Start/End: Complemental strand, 13110127 - 13109799
Alignment:
| Q |
37 |
gttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccag-agttaaatgtagagtct |
134 |
Q |
| |
|
|||||| ||||| ||||||||| |||| |||||||| |||||||||| | |||| || || ||| | |||||||| |||| ||||||||||||||| | |
|
|
| T |
13110127 |
gttttgggaaaatgaagttttcaccctgtccacattgtaaaaaagatattcatttagataagttt-tgttggtacatgccaggagttaaatgtagagttt |
13110029 |
T |
|
| Q |
135 |
ttaatcaacttgatcatttggagaaggtttgcaaaaacaaaa-gaaccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaaca |
233 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||| ||| ||||||||||||| || |
|
|
| T |
13110028 |
gtaatcaacttagtcatgtggagaaggtttgcaaaaacaaaacaaaccagcaggaacaacaagcccgagttgttgagcaccaccaagaagatgaggagca |
13109929 |
T |
|
| Q |
234 |
attgtttaaggct--ttgctattcatctagtagtagcaaagaaacatggctaatagatatttgatgc------cctacgactaacaatgttagtttttct |
325 |
Q |
| |
|
||||||||||| | |||||||| | | ||||||||||||||||||||||||| |||| | ||||| | ||||||||||||||||||||||| | |
|
|
| T |
13109928 |
attgtttaaggtttcttgctatttagcatgtagtagcaaagaaacatggctaattgatagtggatgcaccgatcatacgactaacaatgttagttttttt |
13109829 |
T |
|
| Q |
326 |
agagaacttgatgagt-tttttactccaaa |
354 |
Q |
| |
|
| ||| |||||||| | ||||||||||||| |
|
|
| T |
13109828 |
aaagagcttgatgaatctttttactccaaa |
13109799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 290
Target Start/End: Complemental strand, 48026393 - 48026137
Alignment:
| Q |
38 |
ttttgagaaaaagaagttttcgccctc-ccacattgcaaaaaagatacttattttgaaaaatttatattggtacagaccaga-gttaaatgtagagtctt |
135 |
Q |
| |
|
||||| ||||||||||||| | |||| ||||||||||||||||||||| |||| || || ||| |||||||||| ||| | ||| ||||||||| | |
|
|
| T |
48026393 |
ttttgggaaaaagaagtttccaccctgtccacattgcaaaaaagatactcatttagacaagttt-tattggtacatgccacaagtttaatgtagagcttg |
48026295 |
T |
|
| Q |
136 |
taatcaacttgatcatttggagaaggtttgcaaaaacaaaagaa-ccaataggaataacaacccagagttgttgagcctcacaaagaagatgaggaacaa |
234 |
Q |
| |
|
||| |||||| |||||||||||| |||||||||||||||| || ||| |||||| ||||| || ||||| ||||| ||| ||||||||||||| ||| |
|
|
| T |
48026294 |
taaccaactttgtcatttggagaaagtttgcaaaaacaaaacaaaccagtaggaacaacaagcccgagttcttgagtagcaccaagaagatgaggagcaa |
48026195 |
T |
|
| Q |
235 |
ttgtttaaggcttt--gctattcatctagtagtagcaaagaaacatggctaatagata |
290 |
Q |
| |
|
|||||||||||||| ||| || | | |||||||||||||||||||||||||||||| |
|
|
| T |
48026194 |
ttgtttaaggctttttgctgtttagcatgtagtagcaaagaaacatggctaatagata |
48026137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 284
Target Start/End: Complemental strand, 8402684 - 8402514
Alignment:
| Q |
117 |
gagttaaatgtagagtctttaatcaacttgatcatttggagaaggtttgcaaaaacaaaagaa-ccaataggaataacaacccagagttgttgagcctca |
215 |
Q |
| |
|
|||| |||||||||| | ||| ||||||| |||||| ||||| |||||||||||||||| || ||| |||||| ||||| || |||||||||||| || |
|
|
| T |
8402684 |
gagtaaaatgtagagcttgtaaccaacttgttcatttagagaatgtttgcaaaaacaaaacaaaccagtaggaacaacaagcccgagttgttgagcacca |
8402585 |
T |
|
| Q |
216 |
caaagaagatgaggaacaattgtttaaggct--ttgctattcatctagtagtagcaaagaaacatggctaa |
284 |
Q |
| |
|
| ||||||||||||| |||||||||| |||| |||||||| | || ||||||||||||||||||||| |
|
|
| T |
8402584 |
ccaagaagatgaggagcaattgtttatggcttcttgctatttagtatgttgtagcaaagaaacatggctaa |
8402514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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