View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_25 (Length: 344)
Name: NF18127_low_25
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 52115352 - 52115034
Alignment:
| Q |
8 |
tactggatgggagggatttaaaactatataatctgaaatggctaaggagccaccttggtctggttcagcaggaaccgattatcttctcaacaaccataag |
107 |
Q |
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| T |
52115352 |
tactggatgggagggatttaaaactatataatctgaaatggctaaggagccaccttggtctggttcagcaggaaccaattatcttctcaacaaccataag |
52115253 |
T |
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| Q |
108 |
ggaaaacatcatatatgccagacataatgccagtgaagctgaaatgaaagaggcggcaagaatagctaatgctcatcatttcattagtagcctgcctcat |
207 |
Q |
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| T |
52115252 |
ggaaaacatcatatatgccagacataatgccagtgaagctgaaatgaaagaggcggcaagaatagctaatgctcatcatttcattagtagcctgcctcat |
52115153 |
T |
|
| Q |
208 |
ggttacgatactcatgttggaatgagaggtgttgacttaactccaggacagaaacagaggattgcaattgcaagggtaatcctgaaaaatgcacctatat |
307 |
Q |
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| T |
52115152 |
ggttacgatactcatgttggaatgagaggtgttgacttaactccaggacagaaacagaggattgcaattgcaagggtaatcctgaaaaatgcacctatat |
52115053 |
T |
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| Q |
308 |
tgttgttggatgaagctag |
326 |
Q |
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| T |
52115052 |
tgttgttggatgaagctag |
52115034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 8 - 323
Target Start/End: Original strand, 7652149 - 7652464
Alignment:
| Q |
8 |
tactggatgggagggatttaaaactatataatctgaaatggctaaggagccaccttggtctggttcagcaggaaccgattatcttctcaacaaccataag |
107 |
Q |
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|||||||||||||||||||||| || ||||| ||| |||| ||||||||||||| ||| || ||||||||||||| ||||||||||||||||||||||| |
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| T |
7652149 |
tactggatgggagggatttaaagctctataacttgagatggttaaggagccacctcggtttgattcagcaggaacctattatcttctcaacaaccataag |
7652248 |
T |
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| Q |
108 |
ggaaaacatcatatatgccagacataatgccagtgaagctgaaatgaaagaggcggcaagaatagctaatgctcatcatttcattagtagcctgcctcat |
207 |
Q |
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|||||| || |||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||||| ||| ||||||| |
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| T |
7652249 |
ggaaaatattatatatgcaaggcataatgccagtgaagctgagatgaaagaggctgcaagaatagcaaatgcacatcattttattagcagcttgcctcac |
7652348 |
T |
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| Q |
208 |
ggttacgatactcatgttggaatgagaggtgttgacttaactccaggacagaaacagaggattgcaattgcaagggtaatcctgaaaaatgcacctatat |
307 |
Q |
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||||| || || |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||| || | |
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| T |
7652349 |
ggttatgacacacatgttgggatgagaggtgttgatttaaccccaggacagaaacagagaattgcaattgcaagggtagtgctgaaaaatgcaccaatct |
7652448 |
T |
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| Q |
308 |
tgttgttggatgaagc |
323 |
Q |
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| T |
7652449 |
tattgttggatgaagc |
7652464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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