View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_27 (Length: 323)
Name: NF18127_low_27
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 41485867 - 41485566
Alignment:
| Q |
1 |
cataagctgctctatttcatctctaacctgactcatccaaaatattaacttggctaatatgtcactgcttccttttgcagatgaacagagaatgttagtg |
100 |
Q |
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| T |
41485867 |
cataagctgctctatttcatctctaacctgactcatccaaaatattaacttggctaatatggcactgcttccttttgcagatgaacagagaatgttagtg |
41485768 |
T |
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| Q |
101 |
actaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtggatgnnnnnnnttctgtagacatacataatgacaga |
200 |
Q |
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| T |
41485767 |
actaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtggatgaaaaaa-ttctgtagacatacataatgacaga |
41485675 |
T |
|
| Q |
201 |
attttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgccttcaataactttccatc |
300 |
Q |
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| T |
41485674 |
attttgtacattagcacattttcacagggtttcttgtataacccttctttttctatattcacgaaggtattactattgttgccttcaataactttccatc |
41485575 |
T |
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| Q |
301 |
gtattgcag |
309 |
Q |
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||||||||| |
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| T |
41485574 |
gtattgcag |
41485566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 258
Target Start/End: Complemental strand, 41482522 - 41482335
Alignment:
| Q |
65 |
ctgcttccttttgcagatgaacagagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaagaaagtg |
164 |
Q |
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| T |
41482522 |
ctgcttccttttgcaaatgaacagagaatgttactgactaatttatcaaaaccaaata------actattattaagagaaatatcctaagcaagaaagtg |
41482429 |
T |
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| Q |
165 |
gatgnnnnnnnttctgtagacatacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatat |
258 |
Q |
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| T |
41482428 |
gatgaaaaaaattctgtagacatacataatgacagaattttgtacattagcacatattcacagggtttcttgtataacccttccttttctatat |
41482335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 20434878 - 20434953
Alignment:
| Q |
182 |
agacatacataatgacagaattttgtacattagcacattttcacaaggtttcttgtataacccttctttttctatat |
258 |
Q |
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| T |
20434878 |
agacatacacaatgacagaattttgtacattagcacattgtcacatgg-ttcttgtatcacccttctttttctatat |
20434953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 45385302 - 45385393
Alignment:
| Q |
65 |
ctgcttccttttgcagat-gaacagagaatgttagtgactaatttatcaaaaccaaatacacaataatattaagaagagaaatatcctaagcaag |
158 |
Q |
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||||| ||||||||| || ||| ||||||||||| |||| ||||| | ||||||||||| |||||||||| |||||||||||| |||| |||| |
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| T |
45385302 |
ctgctgccttttgcaaatagaatagagaatgttactgacaaatttgtgaaaaccaaataaacaataatat---gaagagaaatatactaatcaag |
45385393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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