View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18127_low_33 (Length: 271)
Name: NF18127_low_33
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 257
Target Start/End: Original strand, 27527804 - 27528022
Alignment:
| Q |
37 |
attctcacagaaaattacttatcttactttattttaaagccttccaaaacaacatttttccacgaactcgtacatatgaaatgaagacaacatactacaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27527804 |
attctcacagaaaattacttatcttactttattttaaagcctttcaaaacaacatttttccatgaactcgtacatatgaaatgaagacaacacactacag |
27527903 |
T |
|
| Q |
137 |
tttcagatgactttgttgaaatgattattgagaaacaaatgggaagaaaatattcttaatcttcttatcttggtcaaaactgtcatcaatcacatatcat |
236 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27527904 |
ta--agatgcctttgttgaaatgattattgagaaacaaatgggaagaaaatattctcaatcttcttatcttggtcaaaactgtcatcaatcacatatcat |
27528001 |
T |
|
| Q |
237 |
tccttccaatatcattacatt |
257 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27528002 |
tccttccaatatcattacatt |
27528022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University