View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18127_low_35 (Length: 249)
Name: NF18127_low_35
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_35 |
 | |
|
| [»] scaffold0772 (1 HSPs) |
| | |
|
| [»] scaffold0161 (3 HSPs) |
| | |
|
| [»] scaffold0299 (2 HSPs) |
| | |
|
| [»] scaffold0758 (1 HSPs) |
| | |
|
| [»] scaffold0037 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0453 (1 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0231 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 17447666 - 17447880
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17447666 |
caaaggagaagtccaagaaaccgactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgggaagatttggatagtgaatc |
17447765 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggat |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17447766 |
agggtttgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagaagttgaaccaaaatcagactctgaggat |
17447865 |
T |
|
| Q |
217 |
gaaaatgaggtatat |
231 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
17447866 |
aaaaatgagatatat |
17447880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 13138402 - 13138616
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
||||||||||||| |||||||| ||||| || | ||||||||| |||| |||||| ||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
13138402 |
caaaggagaagtcaaagaaaccaacttttaaatccaacaagttaagaaaacaaatcaagcagagtttgatggccacctgggaagatttggatagtgaatt |
13138501 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggat |
216 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
13138502 |
agagtctgataaggatgaagctggaaatgaagcaaatgtaggagttgggtcagtagctacagtgacttcagaagttgaacctgatacagactctgaggat |
13138601 |
T |
|
| Q |
217 |
gaaaatgaggtatat |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
13138602 |
gaaaatgaggtatat |
13138616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 19874027 - 19873818
Alignment:
| Q |
22 |
gagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggt |
121 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||| |||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
19874027 |
gagaagtccaagaaacccattttcaagtccaacaagtatagaagacagattaagcaaagtttaatggccacctaggaagatttagatagtgaatcagggt |
19873928 |
T |
|
| Q |
122 |
ctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaa |
221 |
Q |
| |
|
||| |||||||| | || |||||| ||||||| ||||||||||||||||| |||||||| || | ||||||| ||||| |||||||||||||||| |
|
|
| T |
19873927 |
ttgacaaggatgaaacttgagatgaagcaaatgtagttgttgggttagtagctatagtgactttggaagctgaaccagaatcaaactctgaggatgaaaa |
19873828 |
T |
|
| Q |
222 |
tgaggtatat |
231 |
Q |
| |
|
|||||||||| |
|
|
| T |
19873827 |
tgaggtatat |
19873818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 12349772 - 12349564
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
||||||||||||||||||| || | ||||| | |||||||| ||||| ||| |||||| |||| |||||| |||| |||| |||||||||| ||||| |
|
|
| T |
12349772 |
caaaggagaagtctaagaagccagcattcaaattcaacaagtatagaaaacatattaagaagagcttaatgaccacccgagatgatttggatattgaatt |
12349673 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggat |
216 |
Q |
| |
|
| ||||||| |||||||||| || |||||||| |||||||| ||||||||||||||||||| |||||||||| | |||| || ||||||||||||||||| |
|
|
| T |
12349672 |
aaggtctgacaaggatgatgctgcaaatgaagccaatgtagatgttgggttagtagctacaatgacttcagaagctgaatcagaatcagactctgaggat |
12349573 |
T |
|
| Q |
217 |
gaaaatgag |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
12349572 |
gaaaatgag |
12349564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 19448151 - 19447998
Alignment:
| Q |
77 |
agagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctac |
176 |
Q |
| |
|
||||||||||||| || || |||||||| || |||||||| ||||||| ||||| || | | | |||||| ||||||| ||| |||||||||||||| |
|
|
| T |
19448151 |
agagtttaatggcaacctgcgaagatttagacagtgaatctcggtctgaaaaggaagaagcagaagatgaagcaaatgtagttgtggggttagtagctac |
19448052 |
T |
|
| Q |
177 |
agtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
| |||| ||||| | ||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
19448051 |
actgacatcagaagctgaaccagactcagactctgaaaatgaaaatgaggtata |
19447998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 17925864 - 17925809
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctga |
125 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
17925864 |
attaagaagagtttaatggccacctgagaagatttggatagtgaatctggttctga |
17925809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 6755886 - 6755949
Alignment:
| Q |
163 |
gggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgagg |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| || || ||||||| ||||||||||||| |
|
|
| T |
6755886 |
gggttagtagctacagtggcttcagatgttaaacctgaaccaaactctgaagatgaaaatgagg |
6755949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 17056288 - 17056237
Alignment:
| Q |
77 |
agagtttaatggccacatgagaagatttggatagtgaatcagggtctgataa |
128 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||| || |||||||| |
|
|
| T |
17056288 |
agagtttgatggcaacctgagaagatttggatagtgaatctggttctgataa |
17056237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 22307038 - 22306977
Alignment:
| Q |
67 |
caaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataa |
128 |
Q |
| |
|
||||| ||| ||||||| ||||| || || |||||||||||||||||||| || |||||||| |
|
|
| T |
22307038 |
caaatcaagaagagtttgatggcgacctgggaagatttggatagtgaatctggttctgataa |
22306977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 18696924 - 18697138
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| | ||||||||||||||||||||| || |||||| | |||||||| | ||||||||||||||||||| |
|
|
| T |
18696924 |
caaaggataagtccaagaaaccaactttcaaatccaacaagtttagaagacaaatcaaccagagtctgatggccaccagggaagatttggatagtgaatt |
18697023 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggat |
216 |
Q |
| |
|
|||| ||||||||||||| | || | |||||| |||||||||||||||||||||||| | ||||||||||| |||||||| | |||||| ||| ||| |
|
|
| T |
18697024 |
agggcctgataaggatgaagctgaagatgaagcaaatgtaggtgttgggttagtagctgctgtgacttcagaagttgaacctgatacagactttgaagat |
18697123 |
T |
|
| Q |
217 |
gaaaatgaggtatat |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18697124 |
gaaaatgaggtatat |
18697138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 24610646 - 24610859
Alignment:
| Q |
18 |
aaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatca |
117 |
Q |
| |
|
||||||||| || |||||||| |||||||| | ||| ||||| | ||||||||| ||||||||| | |||||||| |||||||||||||||||||||||| |
|
|
| T |
24610646 |
aaaggagaaatccaagaaaccaactttcaaatccaataagttcaaaagacaaatcaagcagagtctgatggccacctgagaagatttggatagtgaatca |
24610745 |
T |
|
| Q |
118 |
gggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatg |
217 |
Q |
| |
|
|||||||||||| || |||||| | |||||| ||||| | ||| ||||||| ||||||||| ||||||||| |||||| || || ||||||| |||| |
|
|
| T |
24610746 |
gggtctgataagaataatgttgaagatgaagcaaatgtggttgtgaggttagtggctacagtggcttcagatgctgaacctgaaacatactctgaagatg |
24610845 |
T |
|
| Q |
218 |
aaaatgaggtatat |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24610846 |
aaaatgaggtatat |
24610859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 16029094 - 16028934
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| ||||||||||| |||||||| ||||| || | | | |||||| ||||||| | ||||||| |
|
|
| T |
16029094 |
attaagaagagtttaatggcaacctgggaagatttagatagtgaatctgggtctgaaaaggaagaagcagaagatgaagcaaatgtagctagagggttag |
16028995 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
| ||||||||||| ||||| | |||||| || | ||| ||||| ||||||||||||||||| |
|
|
| T |
16028994 |
tggctacagtgacatcagaagctgaacctaacttagaatctgaagatgaaaatgaggtata |
16028934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 14079395 - 14079441
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
14079395 |
attaagcagagtttaatggccacctgggaagatttagatagtgaatc |
14079441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 16309730 - 16309944
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
|||||||||| || |||||||| || ||||| | ||||||||| |||||||| || ||||||||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
16309730 |
caaaggagaaatccaagaaaccaaccttcaaatccaacaagttcagaagacagatcaagcagagtttgatggccatctgagaagatttggataatgaatc |
16309829 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggat |
216 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| ||||| | ||| ||||||||||||||| || ||||| ||| |||||| || || | ||| | ||| |
|
|
| T |
16309830 |
agggtctgataagcatggtgttgaggatgaagcaaatgtggttgtggggttagtagctacaatggcttcaaatgctgaacctgaaccataatctaaagat |
16309929 |
T |
|
| Q |
217 |
gaaaatgaggtatat |
231 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
16309930 |
gaaaatgtggtatat |
16309944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 16405790 - 16405637
Alignment:
| Q |
71 |
ttaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagt |
170 |
Q |
| |
|
||||| |||| |||||||| || || |||| | | ||||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
16405790 |
ttaagaagagcttaatggctacctgggaaggtcttgatagtgaatcagaatctgataaggatgatgcttcaaatgaagtcaatctaggtgttgggttagt |
16405691 |
T |
|
| Q |
171 |
agctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatga |
224 |
Q |
| |
|
|| ||||||||||||| | ||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
16405690 |
agttacagtgacttcataagttgaaccataatcagattctgaagatgaaaatga |
16405637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 16670227 - 16670387
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| ||||||||||||| || | |||||||| || |||||||| |||||||| ||||| || |||||| |||||| ||| ||| | | ||||||| |
|
|
| T |
16670227 |
attaagaagagtttaatggcaacctaggaagatttagacagtgaatctgggtctgaaaaggaagaagttggagatgaagcaaatttagctatggggttag |
16670326 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
|||||||| |||| ||||| | |||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
16670327 |
tagctacactgacatcagaagctgaacctgactcagactctgaagatgaaaatgaggtata |
16670387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 17644595 - 17644755
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| ||||||||||||| || | |||||||| || |||||||| |||||||| ||||| || |||||| |||||| ||| ||| | | ||||||| |
|
|
| T |
17644595 |
attaagaagagtttaatggcaacctaggaagatttagacagtgaatctgggtctgaaaaggaagaagttggagatgaagcaaatttagctatggggttag |
17644694 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
|||||||| |||| ||||| | |||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
17644695 |
tagctacactgacatcagaagctgaacctgactcagactctgaagatgaaaatgaggtata |
17644755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 16107064 - 16107223
Alignment:
| Q |
31 |
aagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataagg |
130 |
Q |
| |
|
|||||||| |||||||| | ||||||||| |||||||| || ||||||||| | ||||| || || |||||||| || | ||| |||||||||||||||| |
|
|
| T |
16107064 |
aagaaaccaactttcaaatccaacaagttcagaagacagatcaagcagagtctgatggctacttgggaagatttagacaatgagtcagggtctgataagg |
16107163 |
T |
|
| Q |
131 |
atgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatg |
190 |
Q |
| |
|
|||| | || | ||||| ||||| | ||| ||||||||||||| |||| ||| ||||| |
|
|
| T |
16107164 |
atgaagctgaagatgaaccaaatgtggatgtggggttagtagctatagtggcttaagatg |
16107223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 12326981 - 12327189
Alignment:
| Q |
22 |
gagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggt |
121 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||||| |||||| |||||||| ||| | ||||| | || |||||||| || | ||| ||||||| |
|
|
| T |
12326981 |
gagaaatctaagaaaccaactttcaaatcgaacaagtttataagacagattaagcaaagtctgatggctatttgggaagatttagaaaatgagtcagggt |
12327080 |
T |
|
| Q |
122 |
ctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaa |
221 |
Q |
| |
|
||||||| ||||| |||| | |||||| |||| | | | |||||||| ||||||||| |||| |||| ||| | || |||||||||||||||| |
|
|
| T |
12327081 |
ctgataaagatgaagttgaagatgaagcaaatgcggctttggggttagtggctacagtggcttctgatgcagaatttggaacacactctgaggatgaaaa |
12327180 |
T |
|
| Q |
222 |
tgaggtata |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
12327181 |
tgaggtata |
12327189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 20966716 - 20966517
Alignment:
| Q |
31 |
aagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataagg |
130 |
Q |
| |
|
|||||||| | |||||| | ||||||||| |||||||| || |||||||||| |||||||| || |||||||| |||| ||| | |||||||||||||| |
|
|
| T |
20966716 |
aagaaaccaagtttcaaatccaacaagttcagaagacagatcgagcagagtttgatggccacttgggaagatttagataatgagttagggtctgataagg |
20966617 |
T |
|
| Q |
131 |
atgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
|||||| || | |||||| |||||| ||| ||||||||||||||| | |||| |||||||||||| || || ||||||| |||||||| |||||||| |
|
|
| T |
20966616 |
atgatgctgaagatgaagctaatgtaattgtggggttagtagctaca-taactttagatgttgaacctgaaacaaactctgaagatgaaaacgaggtata |
20966518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 13532060 - 13531999
Alignment:
| Q |
67 |
caaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataa |
128 |
Q |
| |
|
||||| ||| ||||||| || || ||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
13532060 |
caaatcaagaagagtttgatagcgacatgggaagatttggatagtgaatctggttctgataa |
13531999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 9344904 - 9344690
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
|||||||||| || ||||||| |||||||| | ||||||||| | |||||| || ||| ||||| | |||| | | ||||||||||||||||||||||| |
|
|
| T |
9344904 |
caaaggagaaatccaagaaacaaactttcaaatccaacaagttcataagacagatcaagtagagtctgatggtcgcctgagaagatttggatagtgaatc |
9344805 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggat |
216 |
Q |
| |
|
||||||| |||||| ||||| || ||||| ||||| | | | |||||| |||||||| || ||||||||| |||||| || |||| ||||| ||| |
|
|
| T |
9344804 |
agggtctaataaggctgatgctgaggatgaatcaaatgtggctatggggttattagctacaatggcttcagatgatgaacctgaaacagattctgaagat |
9344705 |
T |
|
| Q |
217 |
gaaaatgaggtatat |
231 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9344704 |
gaaaatgaggtatat |
9344690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 21196787 - 21196851
Alignment:
| Q |
166 |
ttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
|||||||||||| | || ||||| |||||||| | ||||||||| | ||||||||||||||||| |
|
|
| T |
21196787 |
ttagtagctacactaacatcagaagttgaacctgactcagactctaaagatgaaaatgaggtata |
21196851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0772 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0772
Description:
Target: scaffold0772; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 1965 - 2089
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
|||||||||| || ||||| || | |||||| | |||||||||||||||||| |||||||||||| | |||||||| | |||||||||||||| | |||| |
|
|
| T |
1965 |
caaaggagaaatccaagaacccaaatttcaaatccaacaagtttagaagacagattaagcagagtctgatggccacctcagaagatttggatactcaatc |
2064 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttgga |
141 |
Q |
| |
|
||||| |||||||||||||| |||| |
|
|
| T |
2065 |
agggtttgataaggatgatgctgga |
2089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 12095 - 12259
Alignment:
| Q |
67 |
caaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggt |
166 |
Q |
| |
|
||||||||| ||||||||||||| || || |||||||| |||||||||| |||||||| ||||| || | |||| ||||||| ||||||| | | |||| |
|
|
| T |
12095 |
caaattaagaagagtttaatggcaacctgggaagatttaaatagtgaatctgggtctgaaaaggaagaagctggagatgaagtaaatgtagctatggggt |
12194 |
T |
|
| Q |
167 |
tagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| | | | ||||||||| |||||||||||||||||| |
|
|
| T |
12195 |
tagtggctactgtgacttcagaagcagaatctgacttagactctgaagatgaaaatgaggtatat |
12259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 16768 - 16932
Alignment:
| Q |
67 |
caaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggt |
166 |
Q |
| |
|
||||||||| ||||||||||||| || || |||||||| |||||||||| |||||||| ||||| || | |||| ||||||| ||||||| | | |||| |
|
|
| T |
16768 |
caaattaagaagagtttaatggcaacctgggaagatttaaatagtgaatctgggtctgaaaaggaagaagctggagatgaagtaaatgtagctatggggt |
16867 |
T |
|
| Q |
167 |
tagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| | | | ||||||||| |||||||||||||||||| |
|
|
| T |
16868 |
tagtggctactgtgacttcagaagcagaatctgacttagactctgaagatgaaaatgaggtatat |
16932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 19706 - 19870
Alignment:
| Q |
67 |
caaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggt |
166 |
Q |
| |
|
||||||||| ||||||||||||| || || |||||||| |||||||||| |||||||| ||||| || | |||| ||||||| ||||||| | | |||| |
|
|
| T |
19706 |
caaattaagaagagtttaatggcaacctgggaagatttaaatagtgaatctgggtctgaaaaggaagaagctggagatgaagtaaatgtagctatggggt |
19805 |
T |
|
| Q |
167 |
tagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|||| ||||| ||||||||||| | ||| | | | ||||||||| |||||||||||||||||| |
|
|
| T |
19806 |
tagtggctactgtgacttcagaagcagaatctgacttagactctgaagatgaaaatgaggtatat |
19870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 15794 - 15620
Alignment:
| Q |
52 |
aacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtca |
151 |
Q |
| |
|
|||||||| |||||||| || ||||||||| | |||||||| || |||||||| || | ||| ||||||||||||||||||||||||| ||||||| | |
|
|
| T |
15794 |
aacaagttcagaagacagatcaagcagagtctgatggccacctgggaagatttagagaatgagtcagggtctgataaggatgatgttgaggatgaagtaa |
15695 |
T |
|
| Q |
152 |
atgtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgagg |
226 |
Q |
| |
|
|||| | ||| |||||||||||||| ||| ||| |||| | |||| || ||||||||| |||||||||||| |
|
|
| T |
15694 |
atgtggttgtggggttagtagctacggtggcttaagattctaaacctgaactagactctgaatatgaaaatgagg |
15620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 21365 - 21228
Alignment:
| Q |
52 |
aacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtca |
151 |
Q |
| |
|
|||||||| |||||||| || ||||||||| | |||||||| || |||||||| || | ||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
21365 |
aacaagttcagaagacagatcaagcagagtctgatggccacctgggaagatttagagaatgagtcagggtctgataaggatgatgttcaggatgaagcaa |
21266 |
T |
|
| Q |
152 |
atgtaggtgttgggttagtagctacagtgacttcagat |
189 |
Q |
| |
|
|||| | ||| |||||||||||||| ||| ||| |||| |
|
|
| T |
21265 |
atgtggttgtggggttagtagctacggtggctttagat |
21228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 231
Target Start/End: Complemental strand, 19941308 - 19941147
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| |||||||||| |||||||| ||||| || | |||| |||||| ||||||| | | ||||||| |
|
|
| T |
19941308 |
attaagaagagtttaatggcaacctgggaagatttagatagtgaatttgggtctgaaaaggaagaagctggagatgaagcaaatgtagctatggggttag |
19941209 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|| |||| ||||||| ||| | || || || ||||||||||| |||||||||||||||||| |
|
|
| T |
19941208 |
taactactgtgactttagaagcagatcctaactcagactctgaagatgaaaatgaggtatat |
19941147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 230
Target Start/End: Original strand, 22463466 - 22463626
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| || |||||||||| || | |||||| | || |||||||| |||||||| ||||| || |||||| |||||| ||||||| | | ||||| | |
|
|
| T |
22463466 |
attaagaagggtttaatggcaacctaggaagatatagacagtgaatccgggtctgaaaaggaagaagttggagatgaagcaaatgtagctatggggttcg |
22463565 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
|||||||| |||| ||||| |||||||| | ||||| ||||| ||||||||||||||||| |
|
|
| T |
22463566 |
tagctacactgacatcagaagttgaacctgactcagattctgaagatgaaaatgaggtata |
22463626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 19940168 - 19940014
Alignment:
| Q |
77 |
agagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctac |
176 |
Q |
| |
|
||||||| ||||| ||||| |||||||| || ||||| |||| ||||| ||||| ||| || | | || | || |||| |||||||||||| ||||| |
|
|
| T |
19940168 |
agagtttgatggcaacatgggaagatttagacagtgattcagactctgaaaaggaagattctgaagaagatgctaaagtagctgttgggttagtggctac |
19940069 |
T |
|
| Q |
177 |
agtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|||||||||||| | || | || ||||| ||||| |||||||||||||||||| |
|
|
| T |
19940068 |
agtgacttcagaagcagattctaattcagattctgaagatgaaaatgaggtatat |
19940014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 17014632 - 17014478
Alignment:
| Q |
77 |
agagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctac |
176 |
Q |
| |
|
||||||||||||| || || |||||||| || ||||| |||| ||||| ||||| || | || | | || | || |||| |||||||||||| ||||| |
|
|
| T |
17014632 |
agagtttaatggcaacttgggaagatttagacagtgactcagactctgaaaaggaagaggctgaagaagatgctaaagtagttgttgggttagtggctac |
17014533 |
T |
|
| Q |
177 |
agtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
||||||| ||| | || || || ||||| ||||| |||||||||||||||||| |
|
|
| T |
17014532 |
tgtgactttagaagcagatcctaattcagattctgaagatgaaaatgaggtatat |
17014478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 231
Target Start/End: Original strand, 17542569 - 17542723
Alignment:
| Q |
77 |
agagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctac |
176 |
Q |
| |
|
||||||||||||| || || |||||||| || ||||| |||| ||||| ||||| || | || | | || | || |||| |||||||||||| ||||| |
|
|
| T |
17542569 |
agagtttaatggcaacttgggaagatttagacagtgactcagactctgaaaaggaagaggctgaagaagatgctaaagtagttgttgggttagtggctac |
17542668 |
T |
|
| Q |
177 |
agtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
||||||| ||| | || || || ||||| ||||| |||||||||||||||||| |
|
|
| T |
17542669 |
tgtgactttagaagcagatcctaattcagattctgaagatgaaaatgaggtatat |
17542723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0758 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0758
Description:
Target: scaffold0758; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 2478 - 2305
Alignment:
| Q |
17 |
caaaggagaagtctaagaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatc |
116 |
Q |
| |
|
||||||| || || |||||||| || ||||| | ||||||||| |||||||| || || |||||| | ||||| || ||||||||| | || | ||| || |
|
|
| T |
2478 |
caaaggaaaaatcaaagaaaccaaccttcaaatccaacaagttcagaagacagatcaaacagagtctgatggctacttgagaagatctagacaatgagtc |
2379 |
T |
|
| Q |
117 |
agggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatg |
190 |
Q |
| |
|
| |||||||||| ||||||| | | ||||||| ||||| | | | ||||||||||||||| ||| |||||||| |
|
|
| T |
2378 |
aaggtctgataaagatgatgctaaagatgaagtaaatgtggctatggggttagtagctacaatgaattcagatg |
2305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 75332 - 75183
Alignment:
| Q |
80 |
gtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagt |
179 |
Q |
| |
|
|||||||||| || || |||||||| || |||||||| |||||||| |||| | | |||| |||||| ||| ||| | | |||||||| |||||||| |
|
|
| T |
75332 |
gtttaatggcaacctgggaagatttagacagtgaatctgggtctgaataggaaaaagctggagatgaagcaaatatagctatggggttagtggctacagt |
75233 |
T |
|
| Q |
180 |
gacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtat |
229 |
Q |
| |
|
||||||||| | |||||| | | ||||||||| |||||||||||||||| |
|
|
| T |
75232 |
gacttcagaagctgaacctgacttagactctgaagatgaaaatgaggtat |
75183 |
T |
|
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Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 3699 - 3859
Alignment:
| Q |
32 |
agaaacccactttcaagtgcaacaagtttagaagacaaattaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataag-g |
130 |
Q |
| |
|
||||||| || ||||| ||||||||||| | ||||||||| ||||||||||| ||||| | || |||||||| |||| ||| |||| ||||||||| | |
|
|
| T |
3699 |
agaaaccaaccttcaaatgcaacaagttcacaagacaaatcaagcagagtttgatggctaattgggaagatttagataatgagtcagagtctgataaaag |
3798 |
T |
|
| Q |
131 |
atgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgt |
191 |
Q |
| |
|
|||| | || | |||||| ||||| ||| |||||||||||||||||| |||| ||||| |
|
|
| T |
3799 |
atgaagctgaagatgaagcaaatgtgactgtggggttagtagctacagtggcttctgatgt |
3859 |
T |
|
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Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 6836 - 6686
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| || |||||||| |||||||| ||||| || | | | |||||| ||||||| ||| ||||||| |
|
|
| T |
6836 |
attaagaagagtttaatggcaacctgggaagatttagacagtgaatctgggtctgaaaaggaagaagcagaagatgaagcaaatgtagctgtggggttag |
6737 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaa |
220 |
Q |
| |
|
|||||||| |||| | ||| | |||||| | || |||||||| ||||||| |
|
|
| T |
6736 |
tagctacactgacgttagaagctgaacctgactcggactctgaagatgaaa |
6686 |
T |
|
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 24842300 - 24842148
Alignment:
| Q |
70 |
attaagcagagtttaatggccacatgagaagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttag |
169 |
Q |
| |
|
|||||| |||||||||||| || || | |||||| || |||||||| |||||||||| ||| | | |||| ||||||| ||||||| | | ||||||| |
|
|
| T |
24842300 |
attaagaagagtttaatggaaacctgggtagatttagacagtgaatctgggtctgatatggaaaaagctggagatgaagtaaatgtagctatggggttag |
24842201 |
T |
|
| Q |
170 |
tagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaat |
222 |
Q |
| |
|
| |||||| |||||||||| | ||||| | ||| ||||||| ||||||||| |
|
|
| T |
24842200 |
tggctacattgacttcagaagctgaacttgactcatactctgaagatgaaaat |
24842148 |
T |
|
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Target: scaffold0453 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 230
Target Start/End: Original strand, 369 - 501
Alignment:
| Q |
98 |
aagatttggatagtgaatcagggtctgataaggatgatgttggaaatgaagtcaatgtaggtgttgggttagtagctacagtgacttcagatgttgaacc |
197 |
Q |
| |
|
||||||| || ||||||| |||||||| |||| || | || | |||||| ||||||| ||| ||||||||||||||| ||| ||||| | || ||| |
|
|
| T |
369 |
aagatttagacagtgaatatgggtctgaagaggaagaagctgaagatgaagcaaatgtagctgtggggttagtagctacattgatatcagaagctggacc |
468 |
T |
|
| Q |
198 |
aaaatcagactctgaggatgaaaatgaggtata |
230 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |
|
|
| T |
469 |
tgactcagactctgaagatgaaaatgaggtata |
501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 16851911 - 16851877
Alignment:
| Q |
154 |
gtaggtgttgggttagtagctacagtgacttcaga |
188 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
16851911 |
gtagctgttgggttagtagctacagtgacttcaga |
16851877 |
T |
|
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Target: scaffold0083 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 43828 - 43905
Alignment:
| Q |
154 |
gtaggtgttgggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| | || || | ||||| ||||| |||||||||||||||||| |
|
|
| T |
43828 |
gtagttgttgggttagtggctactgtgacttcagaagaagatcctgactcagattctgaagatgaaaatgaggtatat |
43905 |
T |
|
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Target: scaffold0231 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 20489 - 20557
Alignment:
| Q |
163 |
gggttagtagctacagtgacttcagatgttgaaccaaaatcagactctgaggatgaaaatgaggtatat |
231 |
Q |
| |
|
|||||||| || |||||||||||||| | ||||| | ||||||||||| ||| |||||||||||||| |
|
|
| T |
20489 |
gggttagtggcgacagtgacttcagaagatgaacttgactcagactctgaagataaaaatgaggtatat |
20557 |
T |
|
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