View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_36 (Length: 246)
Name: NF18127_low_36
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 46360279 - 46360509
Alignment:
| Q |
1 |
ctttttaataatgatgtcattaactttgagtatgtcaatcaattttatatatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaa |
100 |
Q |
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| T |
46360279 |
ctttttaataatgatgtcattaactttgagtatgtcaatcaattttatatatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaa |
46360378 |
T |
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| Q |
101 |
cattctagacagagaatgctgtttacatgaatgcaatatgattcatcgccgaattgctcatcacacactcataaacaacattatattgcatggagtgagc |
200 |
Q |
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| T |
46360379 |
cattctagacacagaatgctgtttacatgaatgcaatatgattcatcgccgaattgctcatcacacactcataaacaac-----attgcatggagtgagc |
46360473 |
T |
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| Q |
201 |
attacactaccaagtttaaaccataaaaaccctatg |
236 |
Q |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
46360474 |
attatactaccaagtttaaaccataaaaaccctatg |
46360509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 44461499 - 44461680
Alignment:
| Q |
50 |
tatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgc |
149 |
Q |
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| T |
44461499 |
tatgcatgtggaatcactttcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatataattcatcgc |
44461598 |
T |
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| Q |
150 |
cgaattgctcatcacacactcataaacaacattatattgcatggagtgagcattacactaccaagtttaaaccataaaaaccctatg |
236 |
Q |
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| T |
44461599 |
cgaattgctcatcacacactcataaacaac-----attgcatggagtgagcattacactaccaagtttaaatcataaaaaccctatg |
44461680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 44469032 - 44469213
Alignment:
| Q |
50 |
tatgcatgtggaatcactgtcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatatgattcatcgc |
149 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44469032 |
tatgcatgtggaatcactttcttctaggctgcttttggtgtttggacaaaacattctagacagagaatgctgtttacatgaatgcaatataattcatcgc |
44469131 |
T |
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| Q |
150 |
cgaattgctcatcacacactcataaacaacattatattgcatggagtgagcattacactaccaagtttaaaccataaaaaccctatg |
236 |
Q |
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| T |
44469132 |
cgaattgctcatcacacactcataaacaac-----attgcatggagtgagcattacactaccaagtttaaatcataaaaaccctatg |
44469213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 44452238 - 44452285
Alignment:
| Q |
185 |
attgcatggagtgagcattacactaccaagtttaaaccataaaaaccc |
232 |
Q |
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| T |
44452238 |
attgcatggagtgcgcattacgctaccaagtttaaatgataaaaaccc |
44452285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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