View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_4 (Length: 597)
Name: NF18127_low_4
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 38818518 - 38818226
Alignment:
| Q |
19 |
agacaaaacaagttctttagcttctttactcatttcaaaaccacccacaatgttgaagatcctcaattacctcaatctccagccccggcaccggcaccgg |
118 |
Q |
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| T |
38818518 |
agacaaaacaagttctttagcttctttactcatttcaaaaccacccacaatgttgaagatcctcaattacctcaatctccagccccggcacc-------- |
38818427 |
T |
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| Q |
119 |
caccagaacctgcagctgcaccagagattgaatcaactaatataccatcaggaccagcaccagaacctcaatttttagtcgaaacgggaaacggttacgg |
218 |
Q |
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| T |
38818426 |
----agaacctggagctgcaccagagattgaatcaactaatataccatcaggaccagcaccagaacctcaatttttagtcgaaacgggaaacggttacgg |
38818331 |
T |
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| Q |
219 |
tctctatggcattgattctagccaatattctccaaccaaggaaactccaaaaaccacattaacagattttgaagatgagcttctcaatgaagacttcaat |
318 |
Q |
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| T |
38818330 |
tctctatggcattgattctagccaatattctccaaccaaggaaactccaaaaaccacattaacagattttgaagatgagcttctcaatgaagacttcaat |
38818231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 455 - 580
Target Start/End: Complemental strand, 38818124 - 38817999
Alignment:
| Q |
455 |
gctacaatggaaaggagttttacaacaacaattatgagaggaaaggagaaggaatgagtgacacaaggtttatggagaatggaaagtactattacaatgt |
554 |
Q |
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| T |
38818124 |
gctacaatggaaaggagttttacaacaacaattatgagaggaaaggagaaggaatgagtgacacaaggtttatggagaatggaaagtactattacaatgt |
38818025 |
T |
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| Q |
555 |
aaatagtgaaaatgagaagtataaca |
580 |
Q |
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| T |
38818024 |
aaatagtgaaaatgagaagtataaca |
38817999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 38818253 - 38818201
Alignment:
| Q |
326 |
agcttctcaatgaagatttcaatgataataaaagctacaaaaagggatatcct |
378 |
Q |
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| T |
38818253 |
agcttctcaatgaagacttcaatgataataaaagctacaaaaaaggatatcct |
38818201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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