View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18127_low_5 (Length: 586)
Name: NF18127_low_5
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 41782668 - 41782086
Alignment:
| Q |
18 |
atagccgtatttcatctgtcttattttaaattcaataattaaaaaaccatgtcattccagtttggttcttataattcaattggtggtctacatgtattga |
117 |
Q |
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| T |
41782668 |
atagccgtatttcatctgtcttattttaaattcaataattaaaaaaccatgtcattccagtttggttcttataattcaattggtggtctacatgtattga |
41782569 |
T |
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| Q |
118 |
gatgttgacaaaatttgcatcatgccttgacccattgca-------------tgcaattgtttgtttatccacaaaacggtgaatgtgtctggcttaggt |
204 |
Q |
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| T |
41782568 |
gatgttgacaaaatttgcatcatgccttgacccattgcactgcaaacaaccatgcaattgtttgtttatccacaaaacggtgaatgtgtctggcttaggt |
41782469 |
T |
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| Q |
205 |
ttaggcacatgtcaacttcccacatacatttgcaaattgaaaaacaagaccttattaaattcccatgttacaaatcacttacatcaagataagcctttaa |
304 |
Q |
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| T |
41782468 |
ttaggcacatgtcaacttcccacatacatttgcaaattgaaaaacaagaccttattatattcccatgttacaaatcccttacatcaagataagcctttaa |
41782369 |
T |
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| Q |
305 |
aaattctttattatttgnnnnnnnn---caaacagaaaatgacctttgccatttcattcaaagttcactattgagtgccaaaaaagcaaatattatatac |
401 |
Q |
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| T |
41782368 |
aaattctttattatttgtttttttttttcaaacagaaaatgacctttgccatttcattcaaagttcactattgagtgccaaaaaagcaaatattatatac |
41782269 |
T |
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| Q |
402 |
aaaagagggccaaggtgacagctccaacttattactattgttccttcaaagaaaattattattgcataaatggaacaattaagaaaacataagtcttaaa |
501 |
Q |
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| T |
41782268 |
aaaagagggccaaggtgacagctccaacttattactattgttccttcaaagaaaattattattgcataaatggaacaattaagaaaacataagtcttaaa |
41782169 |
T |
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| Q |
502 |
cttacagttcataattactaacacccttaatgtatataaatcatatggttgtgtgtgtttcttcctctttgttttggaatcactt |
586 |
Q |
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| T |
41782168 |
cttacagttcataattactaacaccctta--ttatataaatcatatggttgtgtgtgtttcttcctctttgttttggaatcactt |
41782086 |
T |
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