View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18127_low_8 (Length: 502)

Name: NF18127_low_8
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18127_low_8
NF18127_low_8
[»] scaffold0603 (2 HSPs)
scaffold0603 (144-492)||(5579-5933)
scaffold0603 (139-187)||(5473-5521)
[»] chr3 (11 HSPs)
chr3 (19-140)||(4183782-4183903)
chr3 (371-502)||(4184331-4184468)
chr3 (18-136)||(5970266-5970380)
chr3 (349-492)||(5964916-5965059)
chr3 (147-214)||(5051356-5051423)
chr3 (140-211)||(11498197-11498268)
chr3 (148-211)||(4141014-4141077)
chr3 (246-309)||(5964819-5964882)
chr3 (139-211)||(4080831-4080903)
chr3 (139-210)||(2918913-2918984)
chr3 (237-269)||(5965344-5965376)
[»] chr2 (1 HSPs)
chr2 (19-140)||(28049474-28049595)
[»] chr1 (1 HSPs)
chr1 (19-140)||(19850980-19851101)
[»] chr8 (2 HSPs)
chr8 (19-140)||(17230664-17230785)
chr8 (139-187)||(18387280-18387328)
[»] chr4 (1 HSPs)
chr4 (234-272)||(5988018-5988056)
[»] scaffold1301 (1 HSPs)
scaffold1301 (381-433)||(514-566)


Alignment Details
Target: scaffold0603 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 144 - 492
Target Start/End: Complemental strand, 5933 - 5579
Alignment:
Q  144 ggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagtagagtctgagttcaggagggtcattaattcta 243  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||| | ||||||||||||||||||||   |||||||||| ||||||| |||||||    
T  5933 ggatatgctgtctttgaagttcacgatttgtttggtgaaatcaagactgaagcgttgcgctgcaaagtagacggtgagttcaggtgggtcatgaattcta 5834  T
Q  244 aattgcaaaaattaattgaaaaattagaag---gcttgagttcgggagaacatgtaggtgaattaggtgttttcaaaagtgattggaatcaaattcctcc 340  Q
    |||||| | |||||||||||| ||||||||   | ||||||||||||||||| || ||  |||||  ||||||||||||||||||| ||  || |||| |    
T  5833 aattgcgagaattaattgaaagattagaagaaggattgagttcgggagaacaggttggcaaattaaatgttttcaaaagtgattggtatggaactcctac 5734  T
Q  341 taaa---gatttggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggc 437  Q
     ||    | ||||||||||||||||| ||||||| ||| ||||||||||| |||||||    |||||||| |||||| ||||||||||||||||||||||    
T  5733 aaattctgttttggttgataaatcttctctacaattctactcactctcaatttctgtgtcactgctgttaaacaagattgtttctagtgacttcatcggc 5634  T
Q  438 aagttccaggccacgaagcttgacgtttcgctcttggaaaagcttaagacaatac 492  Q
    || |||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  5633 aacttccaggccatgaagcttgacgtttcactcttggaaaagcttaagacaatac 5579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 5521 - 5473
Alignment:
Q  139 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaa 187  Q
    |||||| ||||| ||||||||||||| ||||||||||||| ||||||||    
T  5521 tgctggaatatgatgtctttgaagttcacaatttgtttgacgaaatcaa 5473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 4183782 - 4183903
Alignment:
Q  19 ttttaaccatttacttgacctgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4183782 ttttaaccatttacttgacctgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaaacagaatg 4183881  T
Q  119 aatgaaatggattgaataagtg 140  Q
    |||||||||| |||||||||||    
T  4183882 aatgaaatggcttgaataagtg 4183903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 371 - 502
Target Start/End: Original strand, 4184331 - 4184468
Alignment:
Q  371 actctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtg---acttcatcggcaagttccaggccacgaagcttgacgtttc- 466  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||     
T  4184331 actctgctcactctcaacttctgtgaaggtgctgttagacaagattgtttctagtgagtacttcatcggcaagttccaggccacgaagcttgacgtttca 4184430  T
Q  467 --gctcttggaaaagcttaagacaatacctatgcttct 502  Q
       ||||||||||||||||||||||||| |||| ||||    
T  4184431 ctactcttggaaaagcttaagacaatacttatggttct 4184468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 5970266 - 5970380
Alignment:
Q  18 attttaaccatttacttgacctgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaat 117  Q
    |||| |||||||| ||||| |||||||||||| |||||||||| |||||||||    || ||| |||||||||||||||||||||| |||||| ||||||    
T  5970266 atttgaaccatttgcttgatctgtaaagatgacctgagtttaattagtaacaa----taaatcccaataaagtcattgctaagtggctcaaaaacagaat 5970361  T
Q  118 gaatgaaatggattgaata 136  Q
    ||||||||||| |||||||    
T  5970362 gaatgaaatggcttgaata 5970380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 492
Target Start/End: Original strand, 5964916 - 5965059
Alignment:
Q  349 tggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggcaagttccaggc 448  Q
    |||||||| |||||  | ||||||||  |||||||||| |||||||||||||| ||||| |||||| |||||||||| | ||| ||| ||| |||||       
T  5964916 tggttgatgaatctcctatacaactcgtctcactctcagcttctgtgaaggtgttgttaaacaagattgtttctagtcagttcgtcgacaacttccacag 5965015  T
Q  449 cacgaagcttgacgtttcgctcttggaaaagcttaagacaatac 492  Q
    ||| || ||||| ||||| |||||||||||||||||||||||||    
T  5965016 cactaaacttgatgtttcactcttggaaaagcttaagacaatac 5965059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 5051356 - 5051423
Alignment:
Q  147 tatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagtaga 214  Q
    |||||| ||||||||||||| ||||||||| | |||||||||||| ||||||| ||||||||||||||    
T  5051356 tatgctctctttgaagttgataatttgttttacgaaatcaagactgaggcgttacgctgcaaagtaga 5051423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 11498268 - 11498197
Alignment:
Q  140 gctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagt 211  Q
    |||| ||| |||||||| ||||||| |||||||  ||||||||||||| ||| |||||||||||||||||||    
T  11498268 gctgagatttgctgtctatgaagttcacaatttcgttgatgaaatcaacactgaggcgttgcgctgcaaagt 11498197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 4141014 - 4141077
Alignment:
Q  148 atgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagt 211  Q
    ||||||||| ||||| ||||||||||||||| |||||||| ||| |||| ||||| ||||||||    
T  4141014 atgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagt 4141077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 5964819 - 5964882
Alignment:
Q  246 ttgcaaaaattaattgaaaaattagaaggcttgagttcgggagaacatgtaggtgaattaggtg 309  Q
    |||| |||||||||||||||||| ||||||| |||||| ||||||||  ||||| |||||||||    
T  5964819 ttgcgaaaattaattgaaaaatttgaaggctggagttctggagaacagctaggtaaattaggtg 5964882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 4080903 - 4080831
Alignment:
Q  139 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagt 211  Q
    ||||| || ||||||||||||||| ||| |||||||| || |||||||| ||| |||| ||||| ||||||||    
T  4080903 tgctgcgagatgctgtctttgaagctgataatttgttagacgaaatcaacactgaggcattgcggtgcaaagt 4080831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 2918913 - 2918984
Alignment:
Q  139 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaag 210  Q
    |||||||||||||||||||||||||| ||||| ||||| |  ||||||| | | |||||||  |||||||||    
T  2918913 tgctgggatatgctgtctttgaagttcacaatctgtttaaccaaatcaatattgaggcgttcagctgcaaag 2918984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 5965344 - 5965376
Alignment:
Q  237 aattctaaattgcaaaaattaattgaaaaatta 269  Q
    |||||||||||||||||||||||||||| ||||    
T  5965344 aattctaaattgcaaaaattaattgaaagatta 5965376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 28049595 - 28049474
Alignment:
Q  19 ttttaaccatttacttgacctgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatg 118  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  28049595 ttttaatcatttacttgacctgtaaagatgacctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggctcaaaaacagaatg 28049496  T
Q  119 aatgaaatggattgaataagtg 140  Q
    |||||||||| |||||||||||    
T  28049495 aatgaaatggcttgaataagtg 28049474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 19851101 - 19850980
Alignment:
Q  19 ttttaaccatttacttgacctgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatg 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||    
T  19851101 ttttaaccatttacttgacttgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggctcaaaaatagaatg 19851002  T
Q  119 aatgaaatggattgaataagtg 140  Q
    |||||||||| |||||||||||    
T  19851001 aatgaaatggcttgaataagtg 19850980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 17230785 - 17230664
Alignment:
Q  19 ttttaaccatttacttgacctgtaaagatgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatg 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |||||||    
T  17230785 ttttaaccatttacttgacctgtaaagatgacctgagtttaactagtcacaaacaatatatcacgataaagtcattgctaagtggctcaaaaacagaatg 17230686  T
Q  119 aatgaaatggattgaataagtg 140  Q
    |||||||||| |||||||||||    
T  17230685 aatgaaatggcttgaataagtg 17230664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 18387280 - 18387328
Alignment:
Q  139 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaa 187  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||    
T  18387280 tgctgggatatgctgtctttgaagttgataatttgtttgacaaaatcaa 18387328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 5988018 - 5988056
Alignment:
Q  234 attaattctaaattgcaaaaattaattgaaaaattagaa 272  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  5988018 attaattctaaattgcaaaaattaattgaaagattagaa 5988056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 433
Target Start/End: Complemental strand, 566 - 514
Alignment:
Q  381 ctctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcat 433  Q
    |||||||||| |||||| ||| ||||| |||||| |||||||||||| |||||    
T  566 ctctcaacttgtgtgaaagtgttgttaaacaagattgtttctagtgagttcat 514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University