View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18127_low_9 (Length: 500)
Name: NF18127_low_9
Description: NF18127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18127_low_9 |
 | |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] scaffold1267 (1 HSPs) |
| |
|
| [»] scaffold1268 (1 HSPs) |
| |
|
| [»] scaffold0891 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Original strand, 35868630 - 35869114
Alignment:
| Q |
16 |
gtacaaatctgcagaatacttcttacacacacgattatatacatcagttatttaatgtatttaaaaattgannnnnnnnnnnnnn-atataatagtcatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| || ||||||||| ||||||||||| | |
|
|
| T |
35868630 |
gtacaaatctgcagaatacttcttacaaacactattatataaatcagttatttaatgcatctaaaaattgttttttttttatttatatataatagtcttt |
35868729 |
T |
|
| Q |
115 |
agggaagtatatattaatttcatgacgagttaattgaagttacaaatttaacttttacaaaatcacgatgacttgttaaagaaacatagagaaaaagatc |
214 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
35868730 |
agggaagtatatactaatttcatcacgagttaattgaagttataaatttagcttttacaaaaccacgatgacttattaa-gaaacatagagaaaaagatc |
35868828 |
T |
|
| Q |
215 |
ggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35868829 |
ggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagctgtccaaagttgtat |
35868928 |
T |
|
| Q |
315 |
ctctcgaatgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtgatgaagtgttgagc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35868929 |
ctctcgaatgcccaaatctttagccactcttccagcaaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtgatgaagtgttgagc |
35869028 |
T |
|
| Q |
415 |
ttaatgacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35869029 |
ttaatcacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
35869114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 224 - 500
Target Start/End: Original strand, 35854229 - 35854505
Alignment:
| Q |
224 |
tacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || ||||||||||| | ||||||||||||| |||||| ||||||| |||| |||| ||| |
|
|
| T |
35854229 |
tacctttgaatggaagaattcctcttttaacaagctcatcatattgcaaatatccgacaaagccacaagcagaagcagtccaaaactgtagctctttaat |
35854328 |
T |
|
| Q |
324 |
gcccaaatctttagccactcttccagcgaagtc-ataattaccatcagcaattatgcaagtaactggaatatgaggtgatgaagtgttgagcttaatgac |
422 |
Q |
| |
|
||| ||||| ||||||||||||||||| || | || || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |
|
|
| T |
35854329 |
gcctaaatccttagccactcttccagcaaatcccattatg-ccatcagcaattatgcaagtaactggaatatgaggtgatgaggtgttaagcttattgat |
35854427 |
T |
|
| Q |
423 |
aagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35854428 |
aagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
35854505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 224 - 499
Target Start/End: Original strand, 35759489 - 35759764
Alignment:
| Q |
224 |
tacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaat |
323 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| || || | ||||||||| ||||||| ||||||| |||||| ||||||| ||||| ||| |||| |
|
|
| T |
35759489 |
taccttggaatggaagaatgcctcttttgacaagttcatcataatgcaaatatcccacaaacccacaagcagaagcagtccaaaactgtatttcttgaat |
35759588 |
T |
|
| Q |
324 |
gcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtgatgaagtgttgagcttaatgaca |
423 |
Q |
| |
|
|||||||||| | || ||||||||||| || || || |||||||||||| |||||||||||||||||||| ||||||||||| || |||||| ||| | |
|
|
| T |
35759589 |
gcccaaatctcttgctactcttccagcaaaaccaaaaagaccatcagcaataatgcaagtaactggaatatgtggtgatgaagtattaagcttattgaga |
35759688 |
T |
|
| Q |
424 |
agctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttat |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35759689 |
agctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttat |
35759764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 223 - 500
Target Start/End: Original strand, 35775913 - 35776190
Alignment:
| Q |
223 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaa |
322 |
Q |
| |
|
||||||||||| |||| |||||| || | |||||||| ||| | || |||||| ||| | |||||||| |||||| ||||||| || ||| ||| |
|
|
| T |
35775913 |
ttacctttgaagggaataattcccctctcaacaagctcatcgtactgtaaatatcccaacatgccacaagcagaagcagtccaaaacactagttcttgaa |
35776012 |
T |
|
| Q |
323 |
tgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtgatgaagtgttgagcttaatgac |
422 |
Q |
| |
|
| |||||||| || |||||| ||||||| ||| | || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| | || |
|
|
| T |
35776013 |
tccccaaatcctttgccacttttccagcaaagcccgaaaatccatcagcaattatgcaagtaactggaatatgtggtgaagaagtgttgagctttttcac |
35776112 |
T |
|
| Q |
423 |
aagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
500 |
Q |
| |
|
||||||||| |||||||| | | | ||||||||| |||| |||||||||| | || |||||||||||||| |||||| |
|
|
| T |
35776113 |
aagctctttcaaaggagcgtgaaagttttttctacttgcttcacacaacggtacaacatcttgtgttgcatttttatc |
35776190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 332
Target Start/End: Original strand, 35737686 - 35737772
Alignment:
| Q |
246 |
tcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaatgcccaaatc |
332 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||| || ||||||| |||||| ||||||| |||| |||| |||||||||||| |
|
|
| T |
35737686 |
tcttttgataagctcatcaaattgcaaatatcccatcaacccacaagcagaagcagtccaaaattgttgctctgcaatgcccaaatc |
35737772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 101 - 500
Target Start/End: Complemental strand, 472 - 76
Alignment:
| Q |
101 |
atataatagtcatcagggaagtatatattaatttcatgacgagttaattgaagttacaaatttaacttttacaaaatcacgatgacttgttaaagaaaca |
200 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||| |||||| |
|
|
| T |
472 |
atataatagtcttcaggg--gtatatacaaatttcatcacgagttaattgaagttacaaatttagcttttacaaaaccacgatgacatattaa-gaaaca |
376 |
T |
|
| Q |
201 |
tagagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
375 |
tagagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagct |
276 |
T |
|
| Q |
301 |
gtccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275 |
gtccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcaaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtg |
176 |
T |
|
| Q |
401 |
atgaagtgttgagcttaatgacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
500 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175 |
atgaagtgttgagcttaatcacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
76 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 101 - 500
Target Start/End: Complemental strand, 472 - 76
Alignment:
| Q |
101 |
atataatagtcatcagggaagtatatattaatttcatgacgagttaattgaagttacaaatttaacttttacaaaatcacgatgacttgttaaagaaaca |
200 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||| |||||| |
|
|
| T |
472 |
atataatagtcttcaggg--gtatatacaaatttcatcacgagttaattgaagttacaaatttagcttttacaaaaccacgatgacatattaa-gaaaca |
376 |
T |
|
| Q |
201 |
tagagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
375 |
tagagaaaaagatcggttaaatttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaacccacaagtagaagct |
276 |
T |
|
| Q |
301 |
gtccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcgaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
275 |
gtccaaagttgtatctctcgaatgcccaaatctttagccactcttccagcaaagtcataattaccatcagcaattatgcaagtaactggaatatgaggtg |
176 |
T |
|
| Q |
401 |
atgaagtgttgagcttaatgacaagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
500 |
Q |
| |
|
|||| ||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
175 |
atgatgtgtttagcttatttataagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
76 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 223 - 500
Target Start/End: Complemental strand, 383 - 106
Alignment:
| Q |
223 |
ttacctttgaatggaagaattcctcttttgacaagctcctcgaattgcaaatatgccacaaagccacaagtagaagctgtccaaagttgtatctctcgaa |
322 |
Q |
| |
|
||||||||||| |||| |||||| || || |||||||| ||| |||| |||||| ||| |||||| ||| ||||| ||||||| || |||| ||| |
|
|
| T |
383 |
ttacctttgaagggaataattcccctgttaacaagctcatcgtattgtaaatatcccaacaagccagaagccgaagcagtccaaaacactagctcttgaa |
284 |
T |
|
| Q |
323 |
tgcccaaatctttagccactcttccagcgaag-tcataattaccatcagcaattatgcaagtaactggaatatgaggtgatgaagtgttgagcttaatga |
421 |
Q |
| |
|
| ||||||||||| || ||||||||||| ||| || |||| ||||| |||||||||||||||||||||| ||| ||| ||||| ||| | || ||| |
|
|
| T |
283 |
tccccaaatcttttgctactcttccagcaaagctcgaaatt-ccatcggcaattatgcaagtaactggaaaatggtgtgttgaagagttcaaatttttga |
185 |
T |
|
| Q |
422 |
caagctctttgaaaggagcataacaattttttctagttgcatcacacaacgttggaatatcttgtgttgcatctttatc |
500 |
Q |
| |
|
|||||||||| |||||||||||| | || ||| || |||| |||||||||| | |||||||||||||||||||||||| |
|
|
| T |
184 |
caagctctttcaaaggagcataaaagttatttttacttgcttcacacaacggtataatatcttgtgttgcatctttatc |
106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University