View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_high_1 (Length: 734)
Name: NF18128_high_1
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 310 - 724
Target Start/End: Original strand, 52511922 - 52512336
Alignment:
| Q |
310 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgctgcataagatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
409 |
Q |
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| T |
52511922 |
tactgacatgaatagagttagtagaagaggacatgttcgtggggtggtggtgttgcataggatgaagatgaaaagaaaggttgtcatgatcatgagtagt |
52512021 |
T |
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| Q |
410 |
aaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatgtaatgactgcatgttcatatccaaggatgtggta |
509 |
Q |
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| T |
52512022 |
aaatctactatgatgatggtcttgtaaattagcactaaatgatgttgatgaattagttaatagatctaatgactgcatgttcatatccaaggatgtggta |
52512121 |
T |
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| Q |
510 |
gaagacgaagacgagtaatgattcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttg |
609 |
Q |
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| T |
52512122 |
gcagacgaagacgagtaatggttcaagtttgatatatcgatgctcgggtgaatctggctactaatattattgttgcctctacttggagttggaatacttg |
52512221 |
T |
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| Q |
610 |
tgtctccaaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatatt |
709 |
Q |
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| T |
52512222 |
tgtctccaaagttaggataattttcagcgttataaaattctcctcctgtaaaaagtgtcttgagcatgagagcattcatatccttgtgctcgtcaatatt |
52512321 |
T |
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| Q |
710 |
attattcttcatctc |
724 |
Q |
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| T |
52512322 |
attattcttcatctc |
52512336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 52511607 - 52511861
Alignment:
| Q |
1 |
cattgccacaagttaattaacaaacaaattattgcaaaagggtaacnnnnnnncatcaaaagataacttatccacttgctctactagctagtcaacttca |
100 |
Q |
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| T |
52511607 |
cattgccacaagttaattaacaaacaaattattgcaaaagggtaactttttttcatcaaaagataacttatccacttgctctactagctagtcaacttca |
52511706 |
T |
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| Q |
101 |
atataattagtagtattttcttatattttgaagatcattcttaatagtatcttatatagttttgtacaataaggtagtgtnnnnnnnnnnttgaaggtgg |
200 |
Q |
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| T |
52511707 |
ttataattagtagtattttcttatattttgaagatcattcttaatagtatcttatatagttttgtacaataaggtagtgtaaaaaaaatattgaaggtgg |
52511806 |
T |
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| Q |
201 |
tatnnnnnnnntgaatatcaccttgcttatttacatgcacgcatacgtatggcgt |
255 |
Q |
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| T |
52511807 |
tataaaaaaactgaatatcaccttgcttatttacatgcacgcatacgtatggcgt |
52511861 |
T |
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