View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_high_3 (Length: 535)
Name: NF18128_high_3
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_high_3 |
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| [»] scaffold0838 (1 HSPs) |
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| [»] scaffold0832 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 252 - 518
Target Start/End: Original strand, 47453174 - 47453440
Alignment:
| Q |
252 |
aacattcattttttataagatgaaatcaatgtatatcccactgctttgtgtgagtttaattttcagtttattttcataattcaagataatttataaaaac |
351 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47453174 |
aacattcattttttataagatgaactcaatgtatatcccactgctttgtgtgagttcaattttcagtttattttcataattcaagataatttataaaaac |
47453273 |
T |
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| Q |
352 |
ggtttataacttatnnnnnnntaattaaacttttatcttttattattaaaataacatgaacactcattctgtaagatgctgcagatgtagttttaatact |
451 |
Q |
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| T |
47453274 |
ggtttataacttataaaaaaataattaaacttttatcttttattattaaaataacatgaacactcattctgtaagatgctgcagatgtagttttaatact |
47453373 |
T |
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| Q |
452 |
tggaatacctaccacagaataaaaccagattttgtttgtactattagagctctcattaagaccaaac |
518 |
Q |
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| T |
47453374 |
tggaatacctaccacagaataaaaccagattttgtttgtactattagagctctcattaagaccaaac |
47453440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 47452895 - 47453162
Alignment:
| Q |
1 |
ggaagtatgaggatcggcgtagtctaaggatgttgcaaaagtgacttttcgtctgttccaaggcagctacaaccatgcatgagcattttgttgacatgtt |
100 |
Q |
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| T |
47452895 |
ggaagtatgaggatcggcgtagtctaaggatgttgcaaaagtgacttttcgtctgttccaaggcagctacaaccatgcatgagcattttgttgacatgtt |
47452994 |
T |
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| Q |
101 |
ctactttagcctgcattattataatatcgtggagattatttggttgatgtggaatttgtattttggcctgtagttgtgtgtaagactttac--taacata |
198 |
Q |
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| T |
47452995 |
ctactttagcctgcattattataatatcgaggagattgtttggttgatgtggaatttgtattttggcctgtagtagtgtgtaagactttactataacata |
47453094 |
T |
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| Q |
199 |
gttatttgttggagaagttatgaaacaacaaaataatgttgaaaaatgctcgcaacattcatttttta |
266 |
Q |
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| T |
47453095 |
ggtatttgttggagaagttatgaaacaacaaaataatgttgaaaaatgctcgcaacattgatttttta |
47453162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 28414004 - 28413948
Alignment:
| Q |
260 |
ttttttataagatgaaatcaatgtatatcccactgctttgtgtgagtttaattttca |
316 |
Q |
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| T |
28414004 |
ttttttattcgatgaaatcaatgtatgtcccaccactttgtgtgagttcaattttca |
28413948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 9952892 - 9952836
Alignment:
| Q |
260 |
ttttttataagatgaaatcaatgtatatcccactgctttgtgtgagtttaattttca |
316 |
Q |
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| T |
9952892 |
ttttttattggatgaaatcaatgcatgtcccaccactttgtgtgagttcaattttca |
9952836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 32211917 - 32211865
Alignment:
| Q |
262 |
ttttataagatgaaatcaatgtatatcccactgctttgtgtgagtttaatttt |
314 |
Q |
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|||||| ||||||||||||||||| ||| ||| ||||||||||||| |||||| |
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| T |
32211917 |
ttttattagatgaaatcaatgtatgtccaactactttgtgtgagttcaatttt |
32211865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 51732313 - 51732378
Alignment:
| Q |
252 |
aacattca-ttttttataagatgaaatcaatgtatatcccactgctttgtgtgagtttaattttca |
316 |
Q |
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|||||||| |||||||| |||||||| ||||||| | ||||| |||| ||||||||||||||||| |
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| T |
51732313 |
aacattcacttttttatttgatgaaattaatgtattttccactactttatgtgagtttaattttca |
51732378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 7775055 - 7775101
Alignment:
| Q |
270 |
gatgaaatcaatgtatatcccactgctttgtgtgagtttaattttca |
316 |
Q |
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| T |
7775055 |
gatgaaatcaatgtatgtcccaccactttgtgtgagttcaattttca |
7775101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0838 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0838
Description:
Target: scaffold0838; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 2269 - 2310
Alignment:
| Q |
262 |
ttttataagatgaaatcaatgtatatcccactgctttgtgtg |
303 |
Q |
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|||||||||||||||||||||||| || |||| ||||||||| |
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| T |
2269 |
ttttataagatgaaatcaatgtatgtcacactactttgtgtg |
2310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0832 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0832
Description:
Target: scaffold0832; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 2300 - 2341
Alignment:
| Q |
262 |
ttttataagatgaaatcaatgtatatcccactgctttgtgtg |
303 |
Q |
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|||||||||||||||||||||||| || |||| ||||||||| |
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| T |
2300 |
ttttataagatgaaatcaatgtatgtcacactactttgtgtg |
2341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 34384814 - 34384770
Alignment:
| Q |
272 |
tgaaatcaatgtatatcccactgctttgtgtgagtttaattttca |
316 |
Q |
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|||||||||||||| ||||||| |||||||||||| |||||||| |
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| T |
34384814 |
tgaaatcaatgtatgtcccactattttgtgtgagttcaattttca |
34384770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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