View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_high_8 (Length: 342)
Name: NF18128_high_8
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 1438117 - 1438424
Alignment:
| Q |
18 |
atgaaactattgtctgaaagagcctcgtgattgatcgatgattgcttgatcttttctttgtataatgactctatgtaacaagtccaaaatatcaggctac |
117 |
Q |
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| T |
1438117 |
atgaaactattgtctgaaagagcctcgtgattgatcgatgattgcttgatcttttctttgtataatgactctatgtaacaagtccaaaatatcaggctac |
1438216 |
T |
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| Q |
118 |
tgttttaagtaacttaccagttcaccatattcacaggaatactgttgttttacatatcttaagatttatgtcagaatcaaacagtatatacttgtaggaa |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438217 |
tgttataagtaacttaccagttcaccatattcacaggaatactgttgttttacatatcttaagatttatgtcagaatcaaacagtatatacttgtaggaa |
1438316 |
T |
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| Q |
218 |
ccaaattggatataggcatcaaaagtccccaccaagttgtcatattaaaatttccacaattaatcttactcttgttttaaagcagtgaactttttcctga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438317 |
ccaaattggatataggcatcaaaagtccccaccaagttgtcatattaaaatttccacaattaatcttactcttgttttaaagcagtgaactttttcctga |
1438416 |
T |
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| Q |
318 |
tatcagat |
325 |
Q |
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|||||||| |
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| T |
1438417 |
tatcagat |
1438424 |
T |
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