View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_low_12 (Length: 258)
Name: NF18128_low_12
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 43875319 - 43875448
Alignment:
| Q |
17 |
agattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttcatgttcc |
116 |
Q |
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| T |
43875319 |
agattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttcatgttcc |
43875418 |
T |
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| Q |
117 |
tgctcctgttcctagtgctaggtaccttca |
146 |
Q |
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| T |
43875419 |
tgctcctgttcctagtgctaggtaccttca |
43875448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 43875476 - 43875550
Alignment:
| Q |
174 |
ataacatgttattgatgcgaaatatccatcacccactctgagtaggccaccgactactaatcatgttttttcatc |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
43875476 |
ataacatgttattgatgcgaaatatccatcacccactctgagtgggctaccgactactaatcatgttttttcatc |
43875550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 39992622 - 39992499
Alignment:
| Q |
17 |
agattggatggcctacaaatgttaagcatgttaaccatgtcacgtttgatcgtttcaatgggtttttgggtcttcctcttgagcttgaggttcatgttcc |
116 |
Q |
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|||| |||||||| || ||||| ||||| ||| ||||| || ||||| ||||||||||| ||| | ||||||||| ||||| |||| ||| | | || |
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| T |
39992622 |
agatcggatggccaactgatgttcagcatattactcatgttacctttgaccgtttcaatggctttcttggtcttcctgttgagtttgaagttgagatccc |
39992523 |
T |
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| Q |
117 |
tgctcctgttcctagtgctaggta |
140 |
Q |
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|| || |||||||||||||||||| |
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| T |
39992522 |
tggtcgtgttcctagtgctaggta |
39992499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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