View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18128_low_14 (Length: 222)

Name: NF18128_low_14
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18128_low_14
NF18128_low_14
[»] chr8 (11 HSPs)
chr8 (1-171)||(2018134-2018304)
chr8 (1-171)||(2014751-2014921)
chr8 (1-175)||(2436920-2437094)
chr8 (1-175)||(1969120-1969294)
chr8 (1-175)||(1963508-1963682)
chr8 (1-172)||(2004350-2004521)
chr8 (1-172)||(2007730-2007901)
chr8 (1-175)||(2011342-2011516)
chr8 (1-175)||(1965178-1965352)
chr8 (45-146)||(10201811-10201912)
chr8 (45-146)||(10208884-10208985)
[»] chr1 (2 HSPs)
chr1 (13-172)||(5902696-5902855)
chr1 (4-175)||(5906171-5906342)
[»] chr6 (2 HSPs)
chr6 (4-73)||(845007-845076)
chr6 (4-73)||(870291-870360)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2018304 - 2018134
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018304 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 2018205  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2018204 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaa 2018134  T

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Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 2014921 - 2014751
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2014921 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgttgcatggtgtgccactaatcacatg 2014822  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2014821 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaa 2014751  T

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Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 2436920 - 2437094
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  2436920 ttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtggtgcatggtgtgccactaatcacatg 2437019  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagt 175  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  2437020 gcctctttttgccgagcagagaacgaattcggttttgttgagtgagggactaaaagtgggactgaggccaagagt 2437094  T

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Target: chr8; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 1969120 - 1969294
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||  ||||||  ||| ||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1969120 ttcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatg 1969219  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagt 175  Q
    |||| | ||||||||||||| || |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  1969220 gcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagt 1969294  T

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Target: chr8; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 1963508 - 1963682
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||| ||||||||||  |||||||||| ||| |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||    
T  1963508 ttcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatggtgtgccactaatcacttg 1963607  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagt 175  Q
    |||||| | ||||||||||||||| ||||| |||||| |  ||||||||||||||||||||||||||||||||||    
T  1963608 gcctctgtatgctgagcagagaacaaatgcagttttgctctgtgaaggcctaaaagtgggactgaggccaagagt 1963682  T

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Target: chr8; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 2004521 - 2004350
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||  ||||||  ||||| || |||||||||||||| ||||| ||||||||||| || ||||||||| ||||||||||||||||||| |||||    
T  2004521 ttcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaaccctagagagtgtggtgcatggtgtgccactaataacatg 2004422  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaag 172  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  2004421 gcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggattgagggcaag 2004350  T

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Target: chr8; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 2007901 - 2007730
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||  ||||||  |||||||||||||||||||| || ||||| ||||||||||| |||||||||||| |||| ||||||||  ||||||| ||    
T  2007901 ttcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacccttgagagtgtggtgcacggtgtgccgttaatcacgtg 2007802  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaag 172  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  2007801 gcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggactgagggcaag 2007730  T

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Target: chr8; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 2011516 - 2011342
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||  ||||| ||||| |||||| | ||||| |||||||||||||||||    
T  2011516 ttcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatggggtgccactaatcacatg 2011417  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagt 175  Q
    |||| | |||||||| ||| ||| |||||| |||||| ||| ||| ||||| |||||||||||||||||||||||    
T  2011416 gcctatgtttgctgaacagggaatgaatgcagttttggtgactgagggccttaaagtgggactgaggccaagagt 2011342  T

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Target: chr8; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 1965178 - 1965352
Alignment:
Q  1 ttcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatg 100  Q
    ||||||||||| |||| |||||| |||| |||||||||| ||||||||||||||| ||||| ||||| |||||| ||||||| |||||||||||||||||    
T  1965178 ttcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacccttgaaagtgtggtgcatggagtgccactaatcacatg 1965277  T
Q  101 gcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagt 175  Q
    |||| | |||||||| ||| ||| |||||| |||||| ||| ||  ||||| |||||||||||||| ||||||||    
T  1965278 gcctatgtttgctgaacagggaatgaatgcagttttggtgactgggggccttaaagtgggactgagaccaagagt 1965352  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 10201912 - 10201811
Alignment:
Q  45 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg 144  Q
    ||||||||||||||||| |||||||||||| || ||||||||||  | ||  ||||||| || | ||||||||| |  | |||||| ||||| |||||||    
T  10201912 tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg 10201813  T
Q  145 aa 146  Q
    ||    
T  10201812 aa 10201811  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 10208985 - 10208884
Alignment:
Q  45 tgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtg 144  Q
    ||||||||||||||||| |||||||||||| || ||||||||||  | ||  ||||||| || | ||||||||| |  | |||||| ||||| |||||||    
T  10208985 tgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaaagatgaatgctgttttattgagtg 10208886  T
Q  145 aa 146  Q
    ||    
T  10208885 aa 10208884  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 5902696 - 5902855
Alignment:
Q  13 gtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcctctatttgc 112  Q
    ||||||| ||||||||||| ||||||| ||||||||| ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| | ||||     
T  5902696 gtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtgatgcatggtgtgccactaatcacatggcctttgtttgg 5902795  T
Q  113 tgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaag 172  Q
    |||||| |||| |||||| ||| || ||||||| ||||| ||||||||||||||||||||    
T  5902796 tgagcaaagaatgaatgcagttgtgctgagtgagggccttaaagtgggactgaggccaag 5902855  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 5906171 - 5906342
Alignment:
Q  4 aaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgttgcatggtgtgccactaatcacatggcc 103  Q
    |||||||| ||||||  ||||||||||| ||||||| ||| |||||||||| |||||  |||||||| | | ||||||||||||||||||||||||||||    
T  5906171 aaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcgatgcatggtgtgccactaatcacatggcc 5906270  T
Q  104 tctatttgctgagcagagaacgaatgcggttttgttgagtgaaggcctaaaagtgggactgaggccaagagt 175  Q
    ||| |||||||||||||||| ||||||  || || ||||||| |||||||| |||||| |||||||||||||    
T  5906271 tctgtttgctgagcagagaatgaatgcatttgtgctgagtgagggcctaaaggtgggagtgaggccaagagt 5906342  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 845076 - 845007
Alignment:
Q  4 aaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt 73  Q
    |||| ||| |||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| |||||    
T  845076 aaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 845007  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 870360 - 870291
Alignment:
Q  4 aaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgt 73  Q
    |||| ||| |||| |||||| |||||||||| || ||||| ||||||||||||||||| ||||| |||||    
T  870360 aaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 870291  T

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