View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_low_2 (Length: 610)
Name: NF18128_low_2
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 379 - 601
Target Start/End: Complemental strand, 8170003 - 8169781
Alignment:
| Q |
379 |
aaaaacgttctccctctacaatcttcttggctgaaacccatcagatatgtcatcgatccaacttctaaatgaaaacaagtatgattttccacttctccga |
478 |
Q |
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| T |
8170003 |
aaaaaagttctccctctacaatcttcttggctgaaacccatcagatatgtcaccgatccaacttctaactgaaaacaagtatgattttccacttctccga |
8169904 |
T |
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| Q |
479 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcaattgaaaatattccaatcg |
578 |
Q |
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| T |
8169903 |
aaatagttcttcgataattcatatacccattgtcattgtcagtccattccctttctttatatccttttcattccttcttcagttgaaaatattccaatcg |
8169804 |
T |
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| Q |
579 |
accaatcctgttctgatgatgtc |
601 |
Q |
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| T |
8169803 |
accaatcatgttctgttgatgtc |
8169781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 8172828 - 8172670
Alignment:
| Q |
18 |
cttttgagataaactcaagacactagagatgcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcagccattgcaaaacata |
117 |
Q |
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| T |
8172828 |
cttttgagataaactca-gacactagagatgcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcggccattgcaaaagata |
8172730 |
T |
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| Q |
118 |
ataataggattgcagccaccacgctttgttgtgttaccttgctatgctgatatatatata |
177 |
Q |
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| T |
8172729 |
ataatatgattgcagccaccacgctttgttatgttaccttgctatgctgatatatatata |
8172670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 7591126 - 7591014
Alignment:
| Q |
37 |
acactagagatgcatcatcttgattcacaccatagttcttgttcagcatgttattttgtttttcagccattgcaaaacataataataggattgcagccac |
136 |
Q |
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| T |
7591126 |
acactagagatgcatcatcttgattcacaccatagttcttgttcagcacgttattttgtttttcagccattgctaaa---gataataggattgaagccac |
7591030 |
T |
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| Q |
137 |
cacgctttgttgtgtt |
152 |
Q |
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| T |
7591029 |
cacgctttgttgtgtt |
7591014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 8172544 - 8172461
Alignment:
| Q |
296 |
aaaaactaatatattaata-cttttctaggttctaaaacctacaacnnnnnnnnnnttgtacatagaaatattgacgggaatataaa |
381 |
Q |
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| T |
8172544 |
aaaaactaatatattaataacttttctaggttctaaaacctacaa---aaaaaaaattgtacatagaaatattgacgggaatataaa |
8172461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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