View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_low_4 (Length: 533)
Name: NF18128_low_4
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 20 - 533
Target Start/End: Original strand, 39278002 - 39278503
Alignment:
| Q |
20 |
aatgaaaatatcaaaaagactaaaactttactacataatatttgcaggttgacactgacatgcatatgcccctgctgtttgtgcttgacagtaattgtgg |
119 |
Q |
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| T |
39278002 |
aatgaaaatatcaaaaagactaaaactttactacataatatttgcaggttgacactgacatgcatatgcccctgctgtttgtgcttgacagtaattgtgg |
39278101 |
T |
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| Q |
120 |
aacttgctttggaattggttaaggctcctcttcatgttatggaatggttcacctctaagatcccatgttgatgttagagattcttttactttaccaattg |
219 |
Q |
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| T |
39278102 |
aacttgctttggaattggttaaggctcctcttcatgttatggaatggttcacctctaagattccatgttgatgttagagattcttttactttaccaattg |
39278201 |
T |
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| Q |
220 |
tatcacatagagttctctagacttgtgaattgggat---tgtttggttcttgtttcaattcaatttcgtattttgttttagtagtatttttcaagtattt |
316 |
Q |
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| T |
39278202 |
tatcacatagagttctctagacttgtgaattgggattaatgtttggttcttgtttcaattcaatttcgtattttgttttagt-----------agtattt |
39278290 |
T |
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| Q |
317 |
gacttaattagggttggtttggattggtttattcaagtttatatgacataaacaccacttctgatattgtttatgagaacttaattattaaaactgctta |
416 |
Q |
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| T |
39278291 |
gac----ttagggttggtttggattggtttattcaagtttatatgacataaacaccacttctgatattgtttatgagaacttaattattaaaactgctta |
39278386 |
T |
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| Q |
417 |
taacttgtcaataagttgttttcagcttatttctttaaattactgttttgttaatctttgtgctttttgggttgtctaaagaaaattaacaatatctggt |
516 |
Q |
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| T |
39278387 |
taacttgtcaataagttgttttcagcttatttctttaaattactgttttgttaatctttgtggtttttgggttgtctaaagaaaattaacaatatttggt |
39278486 |
T |
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| Q |
517 |
tcaataatttcaacagc |
533 |
Q |
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| T |
39278487 |
tcaataatttcaacagc |
39278503 |
T |
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Back To:
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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 448
Target Start/End: Original strand, 2023381 - 2023417
Alignment:
| Q |
412 |
gcttataacttgtcaataagttgttttcagcttattt |
448 |
Q |
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| T |
2023381 |
gcttataacttgtctataagttgttttcaacttattt |
2023417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 449
Target Start/End: Original strand, 18704032 - 18704068
Alignment:
| Q |
413 |
cttataacttgtcaataagttgttttcagcttatttc |
449 |
Q |
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| T |
18704032 |
cttataacatgtctataagttgttttcagcttatttc |
18704068 |
T |
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