View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18128_low_5 (Length: 457)

Name: NF18128_low_5
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18128_low_5
NF18128_low_5
[»] chr3 (1 HSPs)
chr3 (23-439)||(25518164-25518588)
[»] chr4 (7 HSPs)
chr4 (194-448)||(27521322-27521573)
chr4 (194-443)||(27461862-27462108)
chr4 (194-443)||(27482001-27482247)
chr4 (191-443)||(18985959-18986208)
chr4 (123-199)||(27461737-27461813)
chr4 (123-199)||(27481876-27481952)
chr4 (125-182)||(27521614-27521671)
[»] chr5 (12 HSPs)
chr5 (194-443)||(29568361-29568616)
chr5 (194-443)||(1758010-1758256)
chr5 (221-443)||(29168141-29168363)
chr5 (194-428)||(29569707-29569924)
chr5 (259-428)||(27918574-27918743)
chr5 (274-443)||(29425232-29425404)
chr5 (123-188)||(29166790-29166855)
chr5 (123-199)||(1757885-1757961)
chr5 (123-188)||(29425113-29425177)
chr5 (194-224)||(29425206-29425236)
chr5 (157-199)||(29568665-29568707)
chr5 (194-227)||(29166896-29166929)


Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 23 - 439
Target Start/End: Original strand, 25518164 - 25518588
Alignment:
Q  23 aacatttcttcataataaacaagatgagnnnnnnntattagaaaaataacaacaaaatttggatcttcttgaaagacaaattgtgcattctggattctcc 122  Q
    ||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518164 aacatttcttcataataaacaagatgagaaaaaaatcttagaaaaataacaacaaaatttggatcttcttgaaagacaaattgtgcattctggattctcc 25518263  T
Q  123 tatata--ctcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaat------tcaaattcaacaagaatccatgttg 214  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||      |||||||||||||||||||||||||    
T  25518264 tatatatactcaaaccttccctcttttttcacaactctttgccactcacacttactttacaacaaaaattcaaattcaaattcaacaagaatccatgttg 25518363  T
Q  215 atccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctgtcaaacgccgttcaccatcat 314  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25518364 atccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcat 25518463  T
Q  315 catcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccatcacacttcctttcagtctccg 414  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||    
T  25518464 catcttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcg 25518563  T
Q  415 tggtaatgctcttcgccgctatgtc 439  Q
    |||||||||||||||| ||| ||||    
T  25518564 tggtaatgctcttcgctgctgtgtc 25518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 194 - 448
Target Start/End: Complemental strand, 27521573 - 27521322
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||    
T  27521573 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcacactcacaacaactctg 27521477  T
Q  294 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 393  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  27521476 tcaaacgccgttcaccatcatcatcatctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccat 27521377  T
Q  394 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctgctcct 448  Q
     |||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  27521376 tacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatcct 27521322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 194 - 443
Target Start/End: Original strand, 27461862 - 27462108
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||||||||||||| |||    
T  27461862 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcacactcacaacaacactg 27461958  T
Q  294 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 393  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  27461959 tcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccat 27462058  T
Q  394 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 443  Q
     ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  27462059 tacacttcctttcagtctccgtggaaatgctcttagccgctgtgtctctg 27462108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 194 - 443
Target Start/End: Original strand, 27482001 - 27482247
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |   ||||||||||||||||||||| |||    
T  27482001 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcct---catcatcacactcacaacaacactg 27482097  T
Q  294 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 393  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||    
T  27482098 tcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccat 27482197  T
Q  394 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 443  Q
     ||| |||||||||||||||| || ||||||||| |||||| ||||||||    
T  27482198 tacaattcctttcagtctccgcgggaatgctcttagccgctgtgtctctg 27482247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 191 - 443
Target Start/End: Original strand, 18985959 - 18986208
Alignment:
Q  191 caaattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaact 290  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| |||||||||||     
T  18985959 caaattcaacaagaatccatggtgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcaccctcacaacaaca 18986055  T
Q  291 ctgtcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgc 390  Q
    ||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  18986056 ctgtcaaactctgttcaccatcatcatcatctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgc 18986155  T
Q  391 catcacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 443  Q
    ||| |||||| |||||||||||||||| ||| ||||| |||||| ||||||||    
T  18986156 cattacactttctttcagtctccgtgggaatactcttagccgctgtgtctctg 18986208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 27461737 - 27461813
Alignment:
Q  123 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaattcaaattcaa 199  Q
    |||| ||||||||| |||||||||||||| |||||||||||||||||||||  |||||||  ||| |||||||||||    
T  27461737 tatacactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaagttcaaattcaa 27461813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 27481876 - 27481952
Alignment:
Q  123 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaattcaaattcaa 199  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||||||  |||||||| |||  ||||||||||    
T  27481876 tatatactcaaaccatacctcttttttcataactctttgccactcacacttactttacaaccaaagctcaaattcaa 27481952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 27521671 - 27521614
Alignment:
Q  125 tatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaa 182  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||    
T  27521671 tatactcaaaccatccctcttttttcataactctttgccactcacacttactttacaa 27521614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 194 - 443
Target Start/End: Complemental strand, 29568616 - 29568361
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatca------cactcacaaca 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||      ||||||||| |    
T  29568616 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttcatcatcatcatcatcacactcacaaaa 29568517  T
Q  288 actctgtcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctc 387  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29568516 actctttcaaacgccattcaccatcatcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctc 29568417  T
Q  388 cgccatcacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 443  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29568416 cgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg 29568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 194 - 443
Target Start/End: Original strand, 1758010 - 1758256
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||| ||||||| |||||||    
T  1758010 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt---catcatcactctcacaaaaactctg 1758106  T
Q  294 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 393  Q
    ||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  1758107 tcaaacgccgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccat 1758206  T
Q  394 cacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 443  Q
     |||||||||||||||||||| || ||||||||| |||||| ||||||||    
T  1758207 tacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctg 1758256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 221 - 443
Target Start/End: Original strand, 29168141 - 29168363
Alignment:
Q  221 cacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatctt 320  Q
    |||||||||||||||  ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29168141 cacaaacagaaacaaagcatgattattccaacatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatctt 29168240  T
Q  321 ctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaa 420  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||    
T  29168241 ctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaa 29168340  T
Q  421 tgctcttcgccgctatgtctctg 443  Q
    ||||||| || ||| ||||||||    
T  29168341 tgctcttagctgctgtgtctctg 29168363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 194 - 428
Target Start/End: Complemental strand, 29569924 - 29569707
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattgttccaacatcatcaatgcttgatcatcatcacactcacaacaactctg 293  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||                 |||||||||||||||||    
T  29569924 attcaacaagaatccattttgatccctcacaaacacaaacaatccatgattattccaacatcatca-----------------cactcacaacaactctg 29569842  T
Q  294 tcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtcacccgtaatggcttctccgccat 393  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  29569841 tcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccat 29569742  T
Q  394 cacacttcctttcagtctccgtggtaatgctcttc 428  Q
     ||||||||||||||||||||||| ||||||||||    
T  29569741 tacacttcctttcagtctccgtggcaatgctcttc 29569707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 259 - 428
Target Start/End: Original strand, 27918574 - 27918743
Alignment:
Q  259 aatgcttgatcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctgctcaccaaccatcatccaagaagcattctttcgac 358  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||  | |    
T  27918574 aatgcttgatcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggc 27918673  T
Q  359 gcaagcaatgtcacccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaatgctcttc 428  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||    
T  27918674 gcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctcttc 27918743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 274 - 443
Target Start/End: Original strand, 29425232 - 29425404
Alignment:
Q  274 tcacactcacaacaactctgtcaaacgccgttcacc---atcatcatcttctgctcaccaaccatcatccaagaagcattctttcgacgcaagcaatgtc 370  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  29425232 tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc 29425331  T
Q  371 acccgtaatggcttctccgccatcacacttcctttcagtctccgtggtaatgctcttcgccgctatgtctctg 443  Q
    |  |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  29425332 atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctg 29425404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 29166790 - 29166855
Alignment:
Q  123 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaa 188  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||    
T  29166790 tatatactccaaccttccctcttttttcataactctttgccactcacacttactttacaaccaaaa 29166855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 1757885 - 1757961
Alignment:
Q  123 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaattcaaattcaa 199  Q
    |||||||||||||| ||||||||| |||| |||||||||| ||||||||||  |||||||| ||| |||||||||||    
T  1757885 tatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaa 1757961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 29425113 - 29425177
Alignment:
Q  123 tatatactcaaaccttccctcttttttcacaactctttgccactcacacttgatttacaacaaaaa 188  Q
    |||||| ||||||||||||||||||| || |||||||||||||||||||||  |||||||| ||||    
T  29425113 tatataatcaaaccttccctcttttt-cataactctttgccactcacacttactttacaaccaaaa 29425177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 224
Target Start/End: Original strand, 29425206 - 29425236
Alignment:
Q  194 attcaacaagaatccatgttgatccctcaca 224  Q
    |||||||||||||||||||||||||||||||    
T  29425206 attcaacaagaatccatgttgatccctcaca 29425236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 29568707 - 29568665
Alignment:
Q  157 ctttgccactcacacttgatttacaacaaaaattcaaattcaa 199  Q
    |||||||||||||||||  |||||||| |||||||||||||||    
T  29568707 ctttgccactcacacttactttacaaccaaaattcaaattcaa 29568665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 29166896 - 29166929
Alignment:
Q  194 attcaacaagaatccatgttgatccctcacaaac 227  Q
    |||||||||||||||||| |||||||||||||||    
T  29166896 attcaacaagaatccatgatgatccctcacaaac 29166929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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