View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18128_low_7 (Length: 432)
Name: NF18128_low_7
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_low_7 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 418
Target Start/End: Complemental strand, 44950432 - 44950000
Alignment:
| Q |
6 |
agaagcataggaatccatctgcaagatcaacgaattatgaagtgaacctaataaaattttgaacatattgtaaaatttgagatctttacatgtgctgtat |
105 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950432 |
agaagaataggaatccatctgcaagatcaacgaattatgaagtgaacctaataaa-ttttgaacatattgtaaaatttgagatctttacatgtgctgtat |
44950334 |
T |
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| Q |
106 |
ttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaacaagatcaatcaagtatatgttggtgacctaga |
205 |
Q |
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| T |
44950333 |
ttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatggatgtgctaaacaagatcaatcaagtatatgttggtgacctaga |
44950234 |
T |
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| Q |
206 |
tcaacagattggtaagtatgaggaatccatc---------------------tgcattatcaacgaagatggactcaaaggtttatagtcactttatcgc |
284 |
Q |
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| T |
44950233 |
tcaacagattggtaagtattaggaatccatctgcaagatcaacgaatccatctgcattatcaacgaagatggactcaaaggtttatagtcactttatcgc |
44950134 |
T |
|
| Q |
285 |
ttaaaataatgatcattacgtgtttggagttgtcatagtcagtcattgatgtcttaaaataatgatcattttgtctacattgtcataatgacttgtcata |
384 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44950133 |
ttaaaataatgatcattacgtgtttggagttgtcatattcggtcattgatgtcttaaaataatgatcattttgtctacattgtcataatgacttgtcata |
44950034 |
T |
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| Q |
385 |
gtgcctatttcattttttccatgttcaaaatttt |
418 |
Q |
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| T |
44950033 |
gtgcctatttcattttttccatgttcaaaatttt |
44950000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 420
Target Start/End: Complemental strand, 6470960 - 6470842
Alignment:
| Q |
304 |
gtgtttggagttgtcatagtcagtcattgatgtcttaaaataat-gatcattttgtctacattgt-cataatgacttgtcatagtgcctatttcattttt |
401 |
Q |
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|||||||||||||||||||||| |||| ||||| |||||||||| ||||||||||| ||||| | |||| |||||||||||||||||||||| ||||| |
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| T |
6470960 |
gtgtttggagttgtcatagtcaatcatagatgtgttaaaataattgatcattttgtgtacataatgcatattgacttgtcatagtgcctattttgttttt |
6470861 |
T |
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| Q |
402 |
tccatgttcaaaattttga |
420 |
Q |
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||||||||| ||| ||||| |
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| T |
6470860 |
tccatgttccaaaatttga |
6470842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 44944199 - 44944082
Alignment:
| Q |
304 |
gtgtttggagttgtcatagtcagtcatt--gatgtcttaaaataatgatcattttgtctacattgt-cataatgacttgtcatagtgcctatttcatttt |
400 |
Q |
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||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |||| |
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| T |
44944199 |
gtgtttggagttgtcatagacagtcatatggatgccttaaaataatgatcattttgtctacattgtgcatattgacttgtcatcgtgcctattttgtttt |
44944100 |
T |
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| Q |
401 |
ttccatgttcaaaatttt |
418 |
Q |
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||| || |||||||||| |
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| T |
44944099 |
ttcagtgatcaaaatttt |
44944082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 16464426 - 16464269
Alignment:
| Q |
73 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaa |
172 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |
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| T |
16464426 |
ttgtgaaatttgagatctttacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtactaaa |
16464327 |
T |
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| Q |
173 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtatgaggaa |
230 |
Q |
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| T |
16464326 |
caagatcaatggagtatatgttggagacctagatcaacagattggtaagtatgaggaa |
16464269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 73 - 230
Target Start/End: Complemental strand, 16471448 - 16471291
Alignment:
| Q |
73 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaa |
172 |
Q |
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|||| |||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| |
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| T |
16471448 |
ttgtgaaatttgagatctttacatgtgttgtattatgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtattaaa |
16471349 |
T |
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| Q |
173 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtatgaggaa |
230 |
Q |
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| T |
16471348 |
caagatcaatggagtatatgttggagacctagatcaacagattggtaagtatgaggaa |
16471291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 16493889 - 16493763
Alignment:
| Q |
104 |
atttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatgggtgtgctaaacaagatcaatcaagtatatgttggtgaccta |
203 |
Q |
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|||||| | |||||||| | |||| |||||| ||| ||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
16493889 |
atttttgtcaatgtttgagaacaggacagaactggaattagttgaggaaatcgctatggacgttctaaacaagatcaatcgagtatatgttggtgaccta |
16493790 |
T |
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| Q |
204 |
gatcaacagattggtaagtatgaggaa |
230 |
Q |
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| T |
16493789 |
gatcaccaaattgctaagtatgaggaa |
16493763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 418
Target Start/End: Original strand, 418764 - 418879
Alignment:
| Q |
304 |
gtgtttggagttgtcatagtcagtcattgatgtcttaaaataa-tgatcattttgtctacattgt-cataatgacttgtcatagtgcctatttcattttt |
401 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||| ||| || |||||||||| | | || ||||||||||| ||||||||||||||||| |
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| T |
418764 |
gtgtttggagttgtcatagtcaatcatagatgtcttaaaataattgaaca--ttgtctacataatgcttattgacttgtcatggtgcctatttcattttt |
418861 |
T |
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| Q |
402 |
tccatgtt-caaaatttt |
418 |
Q |
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|||||||| ||||||||| |
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| T |
418862 |
tccatgttccaaaatttt |
418879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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