View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18128_low_9 (Length: 375)
Name: NF18128_low_9
Description: NF18128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18128_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 357
Target Start/End: Original strand, 2446348 - 2446711
Alignment:
| Q |
2 |
cctaaactatatagctaggtgaagtatattgaagcaaggtaactcgcatttcagaaaatttatcttcttctctatgaaaacaccggaactcattcaatca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2446348 |
cctaaactatatagctaggtgaagtatattaaagcaaggtaactcgcatttcagaaaatttatcttcttctctatgaaaacactggaactcattcaatca |
2446447 |
T |
|
| Q |
102 |
ttaagttcccttgtattagagtacaaaatctctaggttaatccataaaaaatcatttaaattaatttagttattgattgagagtatcgatcagtcattgg |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446448 |
ttaagttcccttgtattagagtacaaaatctctaggttaatccataaaaaatcatttaaattaatttagttattgattgagagtatcgatcagtcattgg |
2446547 |
T |
|
| Q |
202 |
attaattcaatttcttaggttttacttaagagatgtgagaaaatgtagatgatacatctacttaacaatttgctcttatcagagtagtgttggcta---- |
297 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2446548 |
attaattcaatttcttaggttttacataagagatgtgagaaaatgtagatgatacatctacttaacaatttgctcttatcagagtagtgttggctagtaa |
2446647 |
T |
|
| Q |
298 |
----cttaccttttaactatttttaaatgctaatatttgaatatgttctagcaaattaccttca |
357 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2446648 |
tattcaaaccttttaactatttttaaatgctaatatttgaatatgttctagcaaagtaccttca |
2446711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 11233663 - 11233623
Alignment:
| Q |
42 |
aactcgcatttcagaaaatttatcttcttctctatgaaaac |
82 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
11233663 |
aactcgtatttcacaaaacttatcttcttctctatgaaaac |
11233623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University