View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_high_11 (Length: 249)
Name: NF18129_high_11
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 7923223 - 7923009
Alignment:
| Q |
11 |
aggagcacagatgcattaagttccaatccactttaagtgtagaattattgatgcaattattagtggtaattagtaatcacacaatagcataattcttttg |
110 |
Q |
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| T |
7923223 |
aggaccacagatgcattaagttccaatccacttgaagtgtagaattattgatgcaattattagtggtaattagtaatcacacaatagcataattcttttg |
7923124 |
T |
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| Q |
111 |
attattaatataaataagattagtgattaacaaaaaccaacacggcctactgatgaggccctagtttctggttttgttaaattgatgaagcagtttacat |
210 |
Q |
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| T |
7923123 |
attattaatataaataagattagtgattaacaaaaaccaacacggcctactgatgaggccctagtttctggttttgttaaattgatgaagcagtttacat |
7923024 |
T |
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| Q |
211 |
gaagccggaattatg |
225 |
Q |
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|||||| |||||||| |
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| T |
7923023 |
gaagccagaattatg |
7923009 |
T |
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