View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_high_2 (Length: 459)
Name: NF18129_high_2
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 6353373 - 6353815
Alignment:
| Q |
1 |
ctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggacagaattgtggttacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353373 |
ctgttttgacagtataagctccacccaccgttgacttccagattcgagaatcagttcttgatcgagcaaatagtggaatggacagaattgtggttacatc |
6353472 |
T |
|
| Q |
101 |
agtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctttgtagtgaagaggtggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353473 |
agtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttaccataagatctttgtagtgaagaggtggc |
6353572 |
T |
|
| Q |
201 |
gaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactccagtgcagatttattaggaaaaaagatttgatgctcttttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6353573 |
gaggtggagggtttgtgacctcgccaccattcaacattgtttcagagagaccaactcccgtgcagatttattaggaaaaaagatttgatgctcttttctt |
6353672 |
T |
|
| Q |
301 |
tctagtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattat--nnnnnnnnnctacaaacactttttaaatgaa |
398 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6353673 |
tctggtttatgttaattataactgtaatttccttcatgcccttttgttaacctacacctcttattataaaaaaaaaaactacaaacactttttaaatgaa |
6353772 |
T |
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| Q |
399 |
actcacaaaatactttcgtacaagggacagttatgttagaggt |
441 |
Q |
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| T |
6353773 |
actcacaaaatactttcgtacaaggaacagttatgttagaggt |
6353815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 74 - 217
Target Start/End: Original strand, 23601120 - 23601262
Alignment:
| Q |
74 |
tggaatggacagaattgtggttacatcagtagcatcaaacagattttgtatgacaggaatgttccaagaattcagacccgggtttagcaaagcatttacc |
173 |
Q |
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|||||||||||||||| ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
23601120 |
tggaatggacagaatttctgttacatcaatagcatcaaacaaattttgtatgacagaaatgttccaagaattcagactcgggtttagcaaagca-ttacc |
23601218 |
T |
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| Q |
174 |
ataagatctttgtagtgaagaggtggcgaggtggagggtttgtg |
217 |
Q |
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|||||| ||| ||||||||||||||| |||| ||||||||||| |
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| T |
23601219 |
gtaagatatttatagtgaagaggtggcaaggttgagggtttgtg |
23601262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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