View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_high_3 (Length: 451)
Name: NF18129_high_3
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 42463000 - 42462586
Alignment:
| Q |
18 |
atgaagattataaaatatgtaggagcaggtagaatgtgacatcaggttcaggtccacaaatggatatgtaaaaatcagcatatatttgacatttcttgca |
117 |
Q |
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| T |
42463000 |
atgaagattataaaatatgtaggagcaggtagaatgtgacatcaggttcaggtccacgaatggatatgtaaaaatcagcatatatttgacatttcttgca |
42462901 |
T |
|
| Q |
118 |
ttccttccaatcccttaagtcatagtcataacgtataagactattcgatccacagaatcgaacatacgaaagaaagataaatactctatttatatgtcaa |
217 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |
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| T |
42462900 |
ttccttccaatccctcaagtcatagtcataacgtataagactattcgatccacagaatcaaacatacgaaagaaagataaatactttatttataggtcaa |
42462801 |
T |
|
| Q |
218 |
ttccacagcaaacgctcatatgggtattacaacattgttttaaaactttcagtttcgcaatatattacttgtctgagaccaattatatatttggcagagg |
317 |
Q |
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| T |
42462800 |
ttccacagcaaacactcatatgggtattacaacattgttttaaaactttcagtttcgcaatatattacttgtctgagaccaattatatatttggcagagg |
42462701 |
T |
|
| Q |
318 |
caggaatcaaaactaaaaccaaataatacagaaaaatgtttacatcaaatggtgaatcaaaggtttctccatcatgaaccatcgaagtcaatattaataa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
42462700 |
caggaatcaaaactaaaaccaaataatacagaaaaatgtttacatcaaatggtgaatcaaaggtttctacatcatgaaccatcgatgtcaatattaataa |
42462601 |
T |
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| Q |
418 |
tagaacacagatagg |
432 |
Q |
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||||||||||||||| |
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| T |
42462600 |
tagaacacagatagg |
42462586 |
T |
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