View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_high_9 (Length: 265)
Name: NF18129_high_9
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 36480990 - 36480871
Alignment:
| Q |
23 |
gtaggaaccccgaactatgtaaccatgctcagggtctaacaaccacttccagcttccaggtgtcaggtacattattctgcaaaacaatattatgcaaaaa |
122 |
Q |
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| T |
36480990 |
gtaggaaccccgaaccgtgtaaccatgctcagggtctaacaaccacttccac-------gtgtcaggtacattatcctgcaaaataatattatgcaaaaa |
36480898 |
T |
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| Q |
123 |
tccagagcactccctcaccaaatcctc |
149 |
Q |
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| T |
36480897 |
tacagagctctccttcaccaaatcctc |
36480871 |
T |
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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 41226065 - 41225946
Alignment:
| Q |
23 |
gtaggaaccccgaactatgtaaccatgctcagggtctaacaaccacttccagcttccaggtgtcaggtacattattctgcaaaacaatattatgcaaaaa |
122 |
Q |
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| T |
41226065 |
gtaggaaccccgaaccgtgtaaccatgctcagggtctaacaaccacttccac-------gtgtcaggtacataatcctgcaaaacaatattatgcaaaaa |
41225973 |
T |
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| Q |
123 |
tccagagcactccctcaccaaatcctc |
149 |
Q |
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| T |
41225972 |
aacagagcactccctcaccaactcctc |
41225946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 17725115 - 17725049
Alignment:
| Q |
150 |
aagtgggtgtt-tttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
215 |
Q |
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| T |
17725115 |
aagtgggtgttatttcattatatttccactgtaatcaaccttgcactagtaccaccaatcaattcat |
17725049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 45814432 - 45814551
Alignment:
| Q |
23 |
gtaggaaccccgaactatgtaaccatgctcagggtctaacaaccacttccagcttccaggtgtcaggtacattattctgcaaaacaatattatgcaaaaa |
122 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||| | || |
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| T |
45814432 |
gtaggaaccccgaaccgtgtaaccatgatcagggtctaacaaccacttccac-------gtgtcagatacattatcctgcaaaacaaaattatgctataa |
45814524 |
T |
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| Q |
123 |
tccagagcactccctcaccaaatcctc |
149 |
Q |
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| T |
45814525 |
tacagagcactccctcaccatatcctc |
45814551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 45854737 - 45854787
Alignment:
| Q |
23 |
gtaggaaccccgaactatgtaaccatgctcagggtctaacaaccacttcca |
73 |
Q |
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| T |
45854737 |
gtaggaaccccgaaccgtgtaaccatgctcaggatctaacagccacttcca |
45854787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 16266469 - 16266505
Alignment:
| Q |
83 |
tgtcaggtacattattctgcaaaacaatattatgcaa |
119 |
Q |
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| T |
16266469 |
tgtcaggtacatgatactgcaaaacaatattatgcaa |
16266505 |
T |
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