View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18129_low_1 (Length: 539)

Name: NF18129_low_1
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18129_low_1
NF18129_low_1
[»] chr1 (7 HSPs)
chr1 (1-522)||(28415910-28416426)
chr1 (432-517)||(1935249-1935334)
chr1 (432-517)||(21912983-21913069)
chr1 (430-523)||(28140650-28140746)
chr1 (432-515)||(13494612-13494696)
chr1 (296-395)||(21913106-21913204)
chr1 (432-517)||(16192025-16192111)
[»] chr4 (1 HSPs)
chr4 (300-447)||(6840496-6840643)
[»] scaffold0063 (1 HSPs)
scaffold0063 (436-517)||(8999-9080)
[»] chr5 (2 HSPs)
chr5 (296-386)||(18017655-18017743)
chr5 (430-523)||(22037322-22037418)
[»] chr7 (4 HSPs)
chr7 (430-523)||(1635489-1635585)
chr7 (436-517)||(42781198-42781280)
chr7 (435-522)||(21837229-21837317)
chr7 (486-522)||(20435401-20435437)
[»] chr2 (2 HSPs)
chr2 (430-523)||(35078376-35078472)
chr2 (486-523)||(29436803-29436840)
[»] scaffold0146 (1 HSPs)
scaffold0146 (462-522)||(37289-37352)
[»] scaffold1484 (1 HSPs)
scaffold1484 (431-522)||(315-409)
[»] chr6 (3 HSPs)
chr6 (436-517)||(22245679-22245760)
chr6 (432-517)||(15536398-15536484)
chr6 (463-522)||(19233354-19233416)
[»] scaffold0615 (1 HSPs)
scaffold0615 (433-513)||(3300-3381)
[»] chr8 (1 HSPs)
chr8 (476-520)||(25315811-25315855)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 28416426 - 28415910
Alignment:
Q  1 aagatgcagcagaagagaaacatcagatgatggaggaagatatgttgccccaaaatctgcaatacaaaggtcggcgggatgaagagcaggagcagacaaa 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  28416426 aagatgcaccagaagagaaacatcagatgatggaggaagatatgttgccccaaaatctgcaatacaaaggtcgg---gatgaagagcaggagcagacaaa 28416330  T
Q  101 ttcgttctttcgaaatcttgtgagtgatccacctgaaccagtgatttgggcacttgtctaacccaaattttatgttattttgttatgtagtttgatttct 200  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28416329 tttgttctttcaaaatcttgtgagtgatccacctgaaccagtgatttgggcacttgtctaacccaaattttatgttattttgttatgtagtttgatttct 28416230  T
Q  201 taatttctgccatttcccttatgttgagttagactcttaatgtgtcactctgtactctgtaggattgaatgatgccttatcttttgtactgcatc----- 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||| |||         
T  28416229 taatttctgccatttcccttatgttgagttagactcttaatgtg-------aaactctgtgggattgaatgatgccttatcttttgtactgaatctgatc 28416137  T
Q  296 -tgtttattattaatgaacttgctttttcgtgaattttattagtctagtaacaaatttttcagtaatggtatgttaaaagttcaaaagaggtggatgctt 394  Q
     |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||  |||||||||| ||||||||||||||| | |||| ||    
T  28416136 ttgtttattattaatgaacttgctttttcgtgaattttactagtttagtaacaaatttttcaccaatggtatgtcaaaagttcaaaagagct-gatgttt 28416038  T
Q  395 gcatagattttcaacgatgaaatgtatgacagatggaatgcttaggtagccacgacttctagaaacttcagcttgtaa-gttaagccaaaattttgtttt 493  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  28416037 gcatagattttcaatgatgaaatgtatgacagatggaatgcttaggtagccacgacttc-agaaacttcagcttgtaaggttaagccaaaattttgtttt 28415939  T
Q  494 tcaatttttacaaatatgagtgttccatg 522  Q
    |||||||| ||||||||||||||||||||    
T  28415938 tcaattttcacaaatatgagtgttccatg 28415910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 517
Target Start/End: Original strand, 1935249 - 1935334
Alignment:
Q  432 atgcttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    |||||||||||||||| ||||  |||||| |||||||| ||| ||| ||| ||||||  ||||||||||||||||||||||||||||    
T  1935249 atgcttaggtagccacaactttcagaaacctcagcttgcaaggttatgcctaaattta-tttttcaatttttacaaatatgagtgtt 1935334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 21913069 - 21912983
Alignment:
Q  432 atgcttaggtagccacgacttctagaaacttcagcttgtaa-gttaagccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    |||||||||||||||| ||||| |||||| ||||||||||| |||| | |  ||  || ||||||||||||||||||||||||||||    
T  21913069 atgcttaggtagccacaacttccagaaacctcagcttgtaaggttatggcctaaacttatttttcaatttttacaaatatgagtgtt 21912983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 28140746 - 28140650
Alignment:
Q  430 gaatgcttaggtagccacgacttctagaaacttcagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatgt 523  Q
    ||||| ||||||| |||| ||||| | |||| |||||| |||||||   ||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  28140746 gaatgtttaggtaaccacaacttccataaacctcagctagtaagttctaaagccaaatctttgttttacaattttcacaaatatgagtgttccatgt 28140650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 515
Target Start/End: Original strand, 13494612 - 13494696
Alignment:
Q  432 atgcttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtg 515  Q
    ||||||||||||| || ||||| |||||| ||| |||||||| ||| | |  || ||||||||||||||||||||||||||||||    
T  13494612 atgcttaggtagctacaacttccagaaacctcaacttgtaaggttatggcctaaatttgtttttcaatttttacaaatatgagtg 13494696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 21913204 - 21913106
Alignment:
Q  296 tgtttattattaatgaacttgctttttcgtgaattttattagtctagtaacaaatttttcagtaatggtatgttaaaagttcaaaagaggtggatgcttg 395  Q
    ||||| ||||||||||| || ||||| | |||||||||  ||||||||||||||  |||||  |||||| ||| |||||||| || ||||||| ||||||    
T  21913204 tgtttgttattaatgaatttactttt-cttgaattttaccagtctagtaacaaagatttcaccaatggtttgtcaaaagttccaaggaggtggttgcttg 21913106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 517
Target Start/End: Complemental strand, 16192111 - 16192025
Alignment:
Q  432 atgcttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    ||||||||||||| |  ||||| |||||| ||||||| |||| ||| | |  || ||| ||||||||||||||||||||||||||||    
T  16192111 atgcttaggtagcaagaacttccagaaacctcagcttctaagattatggcctaaatttatttttcaatttttacaaatatgagtgtt 16192025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 447
Target Start/End: Complemental strand, 6840643 - 6840496
Alignment:
Q  300 tattattaatgaacttgctttttcgtgaattttattagtctagtaacaaatttttcagtaatggtatgttaaaagttcaaaagaggtggatgcttgcata 399  Q
    |||||||||||||||||||||||| |||||||||  | | ||||||||||  ||| || |||||| ||| ||||||||||| ||||||  |||||||||     
T  6840643 tattattaatgaacttgctttttcttgaattttaccaatttagtaacaaagattttagcaatggtttgtcaaaagttcaaaggaggtgattgcttgcatg 6840544  T
Q  400 gattttcaacgatgaaatgtatgaca-gatggaatgcttaggtagccac 447  Q
    | | ||||| |  ||| |||||| || || |||||||||||||||||||    
T  6840543 ggtattcaaag-ggaagtgtatggcatgaaggaatgcttaggtagccac 6840496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 517
Target Start/End: Complemental strand, 9080 - 8999
Alignment:
Q  436 ttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    |||||||||||| ||||| |||||| |||||||||||| ||| ||| ||||||  ||||||||||||||||||||||||||||    
T  9080 ttaggtagccacaacttccagaaacctcagcttgtaaggttatgcctaaattta-tttttcaatttttacaaatatgagtgtt 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 18017655 - 18017743
Alignment:
Q  296 tgtttattattaatgaacttgctttttcgtgaattttattagtctagtaacaaatttttcagtaatggtatgttaaaagttcaaaagaggt 386  Q
    |||||||||||||||||||| ||||||  |||||||||  |||||||||||| |  |||||  |||||| ||||||||||||||| |||||    
T  18017655 tgtttattattaatgaacttactttttattgaattttacaagtctagtaacaga--tttcaccaatggtttgttaaaagttcaaaggaggt 18017743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 22037322 - 22037418
Alignment:
Q  430 gaatgcttaggtagccacgacttctagaaacttcagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatgt 523  Q
    ||||| ||||||| |||| ||||| | |||| |||||| |||||||   ||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  22037322 gaatgtttaggtaaccacaacttccataaacctcagctagtaagttctaaagccaaatctttgttttacaattttcacaaatatgagtgttccatgt 22037418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 1635585 - 1635489
Alignment:
Q  430 gaatgcttaggtagccacgacttctagaaacttcagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatgt 523  Q
    ||||| ||||||| |||| ||||| | |||| |||||| |||||||   ||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  1635585 gaatgtttaggtaaccacaacttccataaacctcagctagtaagttctaaagccaaatctttgttttacaattttcacaaatatgagtgttccatgt 1635489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 436 - 517
Target Start/End: Complemental strand, 42781280 - 42781198
Alignment:
Q  436 ttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    |||||||||||| ||||| |||||| |||||||||||| ||| | |  || ||| ||||||||||||||||||||||||||||    
T  42781280 ttaggtagccacaacttccagaaacctcagcttgtaaggttatggcctaaatttatttttcaatttttacaaatatgagtgtt 42781198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 522
Target Start/End: Complemental strand, 21837317 - 21837229
Alignment:
Q  435 cttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtgttccatg 522  Q
    ||||||||||||| ||||| |||||  | |||||||||| |||||||| | |||  |||||||||||| ||| ||||||||||||||||    
T  21837317 cttaggtagccacaacttccagaaatctaagcttgtaaggttaagccatattttgttttttcaattttcacatatatgagtgttccatg 21837229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 522
Target Start/End: Original strand, 20435401 - 20435437
Alignment:
Q  486 tttgtttttcaatttttacaaatatgagtgttccatg 522  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  20435401 tttgttttttaattttcacaaatatgagtgttccatg 20435437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 35078376 - 35078472
Alignment:
Q  430 gaatgcttaggtagccacgacttctagaaacttcagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatgt 523  Q
    ||||| ||||||| |||| ||||| | |||| |||||| |||||||   ||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  35078376 gaatgtttaggtaaccacaacttccataaacctcagctagtaagttctaaagccaaatctttgttttacaattttcacaaatatgagtgttccatgt 35078472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 523
Target Start/End: Complemental strand, 29436840 - 29436803
Alignment:
Q  486 tttgtttttcaatttttacaaatatgagtgttccatgt 523  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  29436840 tttgtttttcaattttcacaaacatgagtgttccatgt 29436803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 522
Target Start/End: Original strand, 37289 - 37352
Alignment:
Q  462 tcagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatg 522  Q
    ||||||||||||||   |||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  37289 tcagcttgtaagttccaaagccaaatttttgttttacaattttcacaaatatgagtgttccatg 37352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1484 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1484
Description:

Target: scaffold1484; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 522
Target Start/End: Original strand, 315 - 409
Alignment:
Q  431 aatgcttaggtagccacgacttctagaaacttcagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatg 522  Q
    |||| ||||||| |||| ||||| | |||| |||||| |||||||   ||||||||  |||||||| ||||||| ||||||||||||||||||||    
T  315 aatgtttaggtaaccacaacttccataaacctcagctagtaagttccaaagccaaatctttgttttacaattttcacaaatatgagtgttccatg 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 22245679 - 22245760
Alignment:
Q  436 ttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    ||||||||| || ||||  |||||| |||||||||||| ||| ||| ||||||  ||||||||||||||||||||||||||||    
T  22245679 ttaggtagcaacaactttcagaaacctcagcttgtaaggttatgcctaaattta-tttttcaatttttacaaatatgagtgtt 22245760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 517
Target Start/End: Original strand, 15536398 - 15536484
Alignment:
Q  432 atgcttaggtagccacgacttctagaaacttcagcttgtaagttaa--gccaaaattttgtttttcaatttttacaaatatgagtgtt 517  Q
    ||||||||||||| || ||||| |||||| ||| |||||||| | |  ||| ||| ||||||||| ||||||||||||||||||||||    
T  15536398 atgcttaggtagctacaacttccagaaacctcaacttgtaaggtgatggcctaaa-tttgttttttaatttttacaaatatgagtgtt 15536484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 463 - 522
Target Start/End: Original strand, 19233354 - 19233416
Alignment:
Q  463 cagcttgtaagtt---aagccaaaattttgtttttcaatttttacaaatatgagtgttccatg 522  Q
    |||||||||||||   |||||||| ||||||||| ||||||| ||||||||||||||| ||||    
T  19233354 cagcttgtaagttccaaagccaaatttttgttttacaattttcacaaatatgagtgtttcatg 19233416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 3300 - 3381
Alignment:
Q  433 tgcttaggtagccacgacttctagaaacttcagcttgtaag-ttaagccaaaattttgtttttcaatttttacaaatatgag 513  Q
    ||||||||||||||| ||||| |||||| |||  ||||||| ||| | |  || ||||||| ||||||||||||||||||||    
T  3300 tgcttaggtagccacaacttccagaaacctcaaattgtaagattatggcctaactttgtttgtcaatttttacaaatatgag 3381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 520
Target Start/End: Original strand, 25315811 - 25315855
Alignment:
Q  476 aagccaaaattttgtttttcaatttttacaaatatgagtgttcca 520  Q
    |||||||| | || |||||||||||||||||||| ||||||||||    
T  25315811 aagccaaattgttatttttcaatttttacaaatacgagtgttcca 25315855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University