View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18129_low_10 (Length: 301)
Name: NF18129_low_10
Description: NF18129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18129_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 40048583 - 40048316
Alignment:
| Q |
16 |
acagcaacagcaccagcagcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacct |
115 |
Q |
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|||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048583 |
acagcaccagcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacct |
40048484 |
T |
|
| Q |
116 |
cagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048483 |
cagattccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacct |
40048384 |
T |
|
| Q |
216 |
aaactcacaactcatatcaccaaaaagcggcggattaacaatcttggcaccggatgactcagctttct |
283 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048383 |
aaactcacaactcatatcagcaaaaagcggcggattaacaatcttggcaccggatgactcagctttct |
40048316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 258
Target Start/End: Original strand, 22056082 - 22056210
Alignment:
| Q |
130 |
gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcacaactca |
229 |
Q |
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|||||||| |||| |||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| ||||| || || | ||||||| || |||| |
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| T |
22056082 |
gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatcatgagcagcgtaaactcgcagctca |
22056181 |
T |
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| Q |
230 |
tatcaccaaaaagcggcggattaacaatc |
258 |
Q |
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| || |||||| |||||| ||||||||| |
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| T |
22056182 |
tcacagcaaaaaacggcggcttaacaatc |
22056210 |
T |
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